Pre_GI: BLASTP Hits

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Query: NC_008261:576923:585866 Clostridium perfringens ATCC 13124, complete genome

Start: 585866, End: 588070, Length: 2205

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_019978:2506472:2523974252397425261632190Halobacteroides halobius DSM 5150, complete genomealpha-galactosidase0892
NC_014828:1905479:1917267191726719194532187Ethanoligenens harbinense YUAN-3 chromosome, complete genomeAlpha-galactosidase0827
NC_015949:1301004:1301004130100413031932190Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeglycoside hydrolase clan GH-D0826
NC_016935:4813916:4825202482520248273672166Paenibacillus mucilaginosus 3016 chromosome, complete genomeglycoside hydrolase0801
NC_019896:1989997:1994831199483119970712241Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeAlpha-galactosidase GalA0746
NC_020291:5808856:5839386583938658416142229Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomealpha-galactosidase 10734
NC_016023:579000:5998295998296020212193Bacillus coagulans 36D1 chromosome, complete genomeglycoside hydrolase clan GH-D0728
NC_013171:75110:9061990619928382220Anaerococcus prevotii DSM 20548, complete genomeglycoside hydrolase clan GH-D0726
NC_015634:652000:6528886528886550802193Bacillus coagulans 2-6 chromosome, complete genomeglycoside hydrolase clan GH-D0716
NC_010610:2013659:2022493202249320247152223Lactobacillus fermentum IFO 3956, complete genomealpha-galactosidase0696
NC_012925:140000:1576571576571598582202Streptococcus suis P1/7, complete genomealpha-galactosidase0691
NC_009442:142500:1574671574671596682202Streptococcus suis 05ZYH33 chromosome, complete genomealpha-galactosidase0691
NC_009443:142500:1573691573691595702202Streptococcus suis 98HAH33, complete genomeAlpha-galactosidase0691
NC_012924:142500:1574621574621596632202Streptococcus suis SC84, complete genomealpha-galactosidase0691
NC_012926:140000:1574411574411596422202Streptococcus suis BM407 chromosome, complete genomealpha-galactosidase0691
NC_003366:461602:4821484821484843552208Clostridium perfringens str. 13, complete genomealpha-galactosidase0689
NC_008525:561000:5640975640975662982202Pediococcus pentosaceus ATCC 25745, complete genomeAlpha-galactosidase0676
NC_013656:2317224:2327238232723823294542217Lactococcus lactis subsp. lactis KF147, complete genomealpha-galactosidase0671
NC_015275:3594890:3602588360258836049302343Clostridium lentocellum DSM 5427 chromosome, complete genomeAlpha-galactosidase1e-155550
NC_008525:561000:5697965697965719552160Pediococcus pentosaceus ATCC 25745, complete genomeAlpha-galactosidase2e-123444
NC_006347:625328:6272746272746294422169Bacteroides fragilis YCH46, complete genomealpha-galactosidase3e-107389
NC_016776:625628:6307376307376329052169Bacteroides fragilis 638R, complete genomeputative melibiase8e-105381
NC_009615:487173:5132425132425154492208Parabacteroides distasonis ATCC 8503 chromosome, complete genomealpha-glycosidase9e-100365
NC_015164:1952500:1967188196718819694012214Bacteroides salanitronis DSM 18170 chromosome, complete genomeAlpha-galactosidase9e-94345
NC_016613:2103792:2123401212340121255032103Vibrio sp. EJY3 chromosome 1, complete sequencealpha-galactosidase8e-92338
NC_010634:1916000:1955777195577719579032127Yersinia pseudotuberculosis PB1/+, complete genomeglycoside hydrolase clan GH-D9e-88325
NC_006155:1916426:1955793195579319579192127Yersinia pseudotuberculosis IP 32953, complete genomealpha-galactosidase9e-88325
NC_010159:1710268:1733307173330717354332127Yersinia pestis Angola, complete genomealpha-galactosidase AgaN1e-87325
NC_012912:2998511:3014857301485730169862130Dickeya zeae Ech1591, complete genomeglycoside hydrolase clan GH-D8e-87322
NC_009078:2718741:2753383275338327555932211Burkholderia pseudomallei 1106a chromosome II, complete sequencealpha-galactosidase4e-85316
NC_007435:1446916:1481558148155814837292172Burkholderia pseudomallei 1710b chromosome II, complete sequencealpha-galactosidase6e-85315
NC_013235:1938889:1947622194762219497782157Nakamurella multipartita DSM 44233, complete genomeglycoside hydrolase clan GH-D4e-74280
NC_014246:288847:2999342999343019251992Mobiluncus curtisii ATCC 43063 chromosome, complete genomeputative alpha-galactosidase6e-72272
NC_013235:1938889:1940433194043319426762244Nakamurella multipartita DSM 44233, complete genomeglycoside hydrolase clan GH-D6e-71269
NC_008043:499399:5175805175805196462067Silicibacter sp. TM1040 mega plasmid, complete sequenceglycoside hydrolase, clan GH-D2e-66254
NC_014656:1704101:1706868170686817091742307Bifidobacterium longum subsp. longum BBMN68 chromosome, completegala17e-63242
NC_014169:2407266:2422093242209324243992307Bifidobacterium longum subsp. longum JDM301 chromosome, completeglycoside hydrolase1e-62242
NC_015520:2821406:2834385283438528364602076Mahella australiensis 50-1 BON chromosome, complete genomealpha-galactosidase6e-40166
NC_013526:439813:4769504769504789231974Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeglycoside hydrolase clan GH-D7e-28126
NC_013530:3204825:3237735323773532398552121Xylanimonas cellulosilytica DSM 15894, complete genomeglycoside hydrolase clan GH-D4e-1894
NC_013714:570329:5769235769235790612139Bifidobacterium dentium Bd1, complete genomeputative glycosidase2e-1688.2
NC_013037:6209424:6247949624794962500512103Dyadobacter fermentans DSM 18053, complete genomeglycoside hydrolase clan GH-D1e-1585.9
NC_016628:935420:9563259563259579861662Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceglycoside hydrolase, clan GH-D1e-1379.3
NC_015577:3621777:3629551362955136315602010Treponema azotonutricium ZAS-9 chromosome, complete genomehypothetical protein2e-1171.6
NC_012483:971592:9854359854359878552421Acidobacterium capsulatum ATCC 51196, complete genomemelibiase family/PKD domain protein4e-0757.4