Pre_GI: BLASTP Hits

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Query: NC_008261:551513:567223 Clostridium perfringens ATCC 13124, complete genome

Start: 567223, End: 568551, Length: 1329

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014171:5068500:5083304508330450846951392Bacillus thuringiensis BMB171 chromosome, complete genomechloramphenicol acetyltransferase6e-78291
NC_014727:1877764:1898606189860618999341329Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,glycosyl transferase, group 17e-61234
NC_020304:2237194:2259806225980622611101305Desulfocapsa sulfexigens DSM 10523, complete genomeglycosyltransferase1e-1997.8
NC_013855:892657:9125839125839138961314Azospirillum sp. B510 plasmid pAB510a, complete sequencehypothetical protein3e-1273.2
NC_003901:2626426:2634042263404226381844143Methanosarcina mazei Go1, complete genomeputative glycosyltransferase2e-1170.9
NC_009614:3081190:3082668308266830838941227Bacteroides vulgatus ATCC 8482 chromosome, complete genomeglycosyl transferase family protein5e-1065.9
NC_019962:960831:9794059794059805351131Natrinema pellirubrum DSM 15624, complete genomeglycosyltransferase9e-1065.5
NC_015061:3840463:3893324389332438944811158Rahnella sp. Y9602 chromosome, complete genomeglycosyl transferase group 11e-0861.6
NC_009337:1200722:1210045121004512111751131Chlorobium phaeovibrioides DSM 265 chromosome, complete genomegroup 1 glycosyl transferase1e-0861.2
NC_013743:3020687:3033423303342330345531131Haloterrigena turkmenica DSM 5511, complete genomeglycosyl transferase group 12e-0860.8
NC_003366:613798:6214666214666226951230Clostridium perfringens str. 13, complete genomeprobable hexosyltransferase1e-0758.2
NC_014721:2534403:2536911253691125380681158Caldicellulosiruptor kristjanssonii 177R1B chromosome, completeglycosyl transferase group 11e-0757.8
NC_010475:420978:4256264256264268521227Synechococcus sp. PCC 7002, complete genomeglycosyl transferase, group 12e-0757.4
NC_013850:1658010:1675254167525416763511098Klebsiella variicola At-22 chromosome, complete genomeglycosyl transferase group 12e-0757.4
NC_015174:5157355:5172805517280551740521248Planctomyces brasiliensis DSM 5305 chromosome, complete genomeglycosyl transferase group 13e-0757
NC_000916:251000:2735872735872746391053Methanothermobacter thermautotrophicus str. Delta H, completeLPS biosynthesis RfbU related protein8e-0755.5
NC_015666:1623790:1641085164108516423291245Halopiger xanaduensis SH-6 chromosome, complete genomegroup 1 glycosyl transferase9e-0755.5
NC_003901:2626426:2643372264337226444781107Methanosarcina mazei Go1, complete genometransposase2e-0654.3
NC_020389:2245368:2261555226155522626611107Methanosarcina mazei Tuc01, complete genomeglycosyl transferase, group 1 family protein2e-0654.3