Pre_GI: BLASTP Hits

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Query: NC_008261:3014373:3026569 Clostridium perfringens ATCC 13124, complete genome

Start: 3026569, End: 3027450, Length: 882

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:2788268:280390228039022804810909Clostridium perfringens str. 13, complete genomehypothetical protein7e-167586
NC_008262:2649289:266838426683842669265882Clostridium perfringens SM101, complete genomemccF-like protein1e-165582
NC_008593:2457594:245862024586202459537918Clostridium novyi NT, complete genomemccF-like protein3e-69261
NC_011837:3776541:377943537794353780358924Clostridium kluyveri NBRC 12016, complete genomehypothetical protein5e-67254
NC_009706:3845039:384794238479423848856915Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein6e-67254
NC_010520:35845:764517645177359909Clostridium botulinum A3 str. Loch Maree, complete genomeLD-carboxypeptidase family protein1e-66253
NC_012658:35500:765687656877476909Clostridium botulinum Ba4 str. 657 chromosome, complete genomeLD-carboxypeptidase family protein8e-66250
NC_009495:38000:826658266583573909Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeLD-carboxypeptidase2e-65249
NC_009697:38000:754687546876376909Clostridium botulinum A str. ATCC 19397 chromosome, completeLD-carboxypeptidase family protein2e-65249
NC_009698:38000:754697546976377909Clostridium botulinum A str. Hall chromosome, complete genomeLD-carboxypeptidase2e-65249
NC_009699:33452:773597735978267909Clostridium botulinum F str. Langeland chromosome, complete genomeLD-carboxypeptidase family protein1e-65249
NC_017297:33519:776277762778535909Clostridium botulinum F str. 230613 chromosome, complete genomeLD-carboxypeptidase family protein1e-65249
NC_012563:36000:765907659077498909Clostridium botulinum A2 str. Kyoto, complete genomeLD-carboxypeptidase family protein4e-65248
NC_010516:42475:823228232283230909Clostridium botulinum B1 str. Okra, complete genomeLD-carboxypeptidase family protein8e-65247
NC_003030:303812:349282349282350202921Clostridium acetobutylicum ATCC 824, complete genomeMccF-like protein2e-64246
NC_015687:303810:349278349278350198921Clostridium acetobutylicum DSM 1731 chromosome, complete genomeMccF-like protein2e-64246
NC_015425:2690448:269347726934772694394918Clostridium botulinum BKT015925 chromosome, complete genomemccF-like protein4e-64244
NC_014328:85290:137935137935138855921Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative LD-carboxypeptidase A family protein4e-63241
NC_012491:1293086:129942012994201300349930Brevibacillus brevis NBRC 100599, complete genomehypothetical protein1e-54213
NC_009706:2925000:294414729441472945070924Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein1e-50200
NC_011837:2856500:287564028756402876572933Clostridium kluyveri NBRC 12016, complete genomehypothetical protein1e-50200
NC_016641:4727000:473730847373084738231924Paenibacillus terrae HPL-003 chromosome, complete genomepeptidase U61 LD-carboxypeptidase A2e-48192
NC_016048:2167440:217832821783282179287960Oscillibacter valericigenes Sjm18-20, complete genomepeptidase S66 family protein8e-47187
NC_014041:4093190:4108025410802541090801056Zunongwangia profunda SM-A87 chromosome, complete genomemuramoyltetrapeptide carboxypeptidase2e-42172
NC_007509:644000:657860657860658729870Burkholderia sp. 383 chromosome 3, complete sequencePeptidase U61, LD-carboxypeptidase A3e-38159
NC_017243:349144:365546365546366502957Brachyspira intermedia PWS/A chromosome, complete genomeLD-carboxypeptidase A family protein9e-36150
NC_015278:176508:179281179281180216936Aerococcus urinae ACS-120-V-Col10a chromosome, complete genomeLD-carboxypeptidase5e-35148
NC_013159:2098500:211595221159522116872921Saccharomonospora viridis DSM 43017, complete genomeuncharacterized MccF-like protein (microcin C7 resistance)3e-33142
NC_014623:3238996:325422432542243255135912Stigmatella aurantiaca DW4/3-1 chromosome, complete genomeld-carboxypeptidase family protein9e-32137
NC_011772:5222917:524588252458825246868987Bacillus cereus G9842, complete genomehypothetical protein1e-30134
NC_010694:2189652:219343021934302194374945Erwinia tasmaniensis, complete genomeMuramoyltetrapeptide carboxypeptidase A1e-30134
NC_020181:734477:754949754949755863915Enterobacter aerogenes EA1509E, complete genomeMuramoyltetrapeptide carboxypeptidase6e-30131
NC_012472:5126186:514518451451845146170987Bacillus cereus 03BB102, complete genomehypothetical protein3e-29129
NC_012581:5085915:510470951047095105695987Bacillus anthracis str. CDC 684 chromosome, complete genomehypothetical protein6e-29128
NC_020126:2687627:269169326916932692604912Myxococcus stipitatus DSM 14675, complete genomeLD-carboxypeptidase family protein1e-27124
NC_009348:2738742:2760716276071627617291014Aeromonas salmonicida subsp. salmonicida A449, complete genomemicrocin immunity protein MccF7e-27121
NC_017030:2299592:231997323199732320887915Corallococcus coralloides DSM 2259 chromosome, complete genomeLD-carboxypeptidase family protein6e-27121
NC_002506:370629:3952453952453962491005Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completemicrocin immunity protein MccF9e-26117
NC_016446:49618:9578495784967881005Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completemicrocin immunity protein MccF9e-26117
NC_016945:370471:3950643950643960681005Vibrio cholerae IEC224 chromosome II, complete sequencemicrocin immunity protein MccF9e-26117
NC_002506:324552:3360313360313370351005Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, completemicrocin immunity protein MccF8e-26117
NC_009456:787322:8854378854378864411005Vibrio cholerae O395 chromosome 1, complete sequencemicrocin immunity protein MccF8e-26117
NC_012583:361241:3775013775013785051005Vibrio cholerae O395 chromosome chromosome II, complete sequencemicrocin immunity protein MccF8e-26117
NC_016446:49618:6109661096621001005Vibrio cholerae O1 str. 2010EL-1786 chromosome 2, completemicrocin immunity protein MccF8e-26117
NC_016945:324519:3359993359993370031005Vibrio cholerae IEC224 chromosome II, complete sequencemicrocin immunity protein MccF8e-26117
NC_017518:1701958:1704190170419017053741185Neisseria meningitidis NZ-05/33 chromosome, complete genomemuramoyltetrapeptide carboxypeptidase6e-26117
NC_017268:747429:756186756186757178993Treponema pallidum subsp. pallidum str. Chicago chromosome,muramoyltetrapeptide carboxypeptidase5e-25115
NC_000919:746875:7549377549377559501014Treponema pallidum subsp. pallidum str. Nichols, complete genomeimmunity protein (mccF)5e-25115
NC_010741:745357:7563857563857573981014Treponema pallidum subsp. pallidum SS14, complete genomeimmunity protein5e-25115
NC_016842:748419:7565207565207575331014Treponema pallidum subsp. pertenue str. SamoaD chromosome, completemuramoyltetrapeptide carboxypeptidase5e-25115
NC_016843:747950:7567077567077577201014Treponema pallidum subsp. pertenue str. Gauthier chromosome,muramoyltetrapeptide carboxypeptidase5e-25115
NC_016844:748117:7568747568747578871014Treponema pallidum subsp. pallidum DAL-1 chromosome, completemuramoyltetrapeptide carboxypeptidase5e-25115
NC_016848:748873:7569747569747579871014Treponema pallidum subsp. pertenue str. CDC2 chromosome, completemuramoyltetrapeptide carboxypeptidase5e-25115
NC_021508:745388:7564167564167574291014Treponema pallidum subsp. pallidum SS14, complete genomemuramoyltetrapeptide carboxypeptidase5e-25115
NC_015714:741044:7498017498017508141014Treponema paraluiscuniculi Cuniculi A chromosome, complete genomemuramoyltetrapeptide carboxypeptidase5e-25115
NC_014500:3175283:3207184320718432082331050Dickeya dadantii 3937 chromosome, complete genomeMicrocin immunity protein MccF4e-25115
NC_012580:353273:3537103537103547141005Vibrio cholerae M66-2 chromosome II, complete sequencemicrocin immunity protein MccF3e-25115
NC_013595:4796436:4809717480971748108111095Streptosporangium roseum DSM 43021, complete genomeMccF-like protein9e-25114
NC_012583:361241:4065324065324075361005Vibrio cholerae O395 chromosome chromosome II, complete sequencemicrocin immunity protein MccF3e-24112
NC_009456:787322:8564068564068574101005Vibrio cholerae O395 chromosome 1, complete sequencemicrocin immunity protein MccF3e-24112
NC_021182:1245692:1250540125054012515771038Clostridium pasteurianum BC1, complete genomeputative MccF-like protein (microcin C7 resistance)5e-24111
NC_010981:712843:714947714947715906960Wolbachia pipientis, complete genomePeptidase S66 family protein2e-23110
NC_015275:820723:820723820723821580858Clostridium lentocellum DSM 5427 chromosome, complete genomepeptidase U61 LD-carboxypeptidase A7e-23107
NC_016023:1923170:194558819455881946577990Bacillus coagulans 36D1 chromosome, complete genomepeptidase U61 LD-carboxypeptidase A2e-22106
NC_009482:619467:619467619467620315849Synechococcus sp. RCC307 chromosome, complete genomehypothetical protein3e-22105
NC_008781:2108893:212107421210742122033960Polaromonas naphthalenivorans CJ2, complete genomeMuramoyltetrapeptide carboxypeptidase7e-22104
NC_020291:4502467:451113045111304511999870Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomepeptidase U61 LD-carboxypeptidase A3e-21102
NC_013892:2108175:214667121466712147588918Xenorhabdus bovienii SS-2004 chromosome, complete genomemuramoyltetrapeptide carboxypeptidase5e-21102
NC_008262:2649289:268209826820982682967870Clostridium perfringens SM101, complete genomeLD-carboxypeptidase family protein2e-2099.8
NC_013093:3996197:401870740187074019609903Actinosynnema mirum DSM 43827, complete genomepeptidase U61 LD-carboxypeptidase A2e-2099.8
NC_015682:1457004:146995414699541470814861Thermodesulfobacterium sp. OPB45 chromosome, complete genomepeptidase U61 LD-carboxypeptidase A1e-1894
NC_009648:2252757:2268636226863622696731038Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeL, D-carboxypeptidase A (in murein recycling)5e-1892
NC_016845:3024041:3038719303871930397561038Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,peptidase U61 LD-carboxypeptidase A6e-1788.2
NC_019964:34119:3681136811378871077Halovivax ruber XH-70, complete genomeputative MccF-like protein (microcin C7 resistance)2e-1686.7
NC_012779:261438:2709802709802721671188Edwardsiella ictaluri 93-146, complete genomepeptidase, U61 family1e-1584
NC_006448:59654:819068190682424519Streptococcus thermophilus LMG 18311, complete genomebacteriocin self-immunity protein, putative, truncated1e-1584
NC_012667:931390:989999989999990763765Vibrio cholerae MJ-1236 chromosome 2, complete genomemicrocin immunity protein MccF5e-1478.6
NC_014727:1071773:108404410840441084892849Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,microcin c7 resistance mccf related protein1e-1170.5
NC_007103:230872:2486342486342496681035Bacillus cereus E33L plasmid pE33L466, complete sequencepossible microcin immunity protein2e-1169.7
NC_015964:1389628:1389628138962813906591032Haemophilus parainfluenzae T3T1, complete genomehypothetical protein6e-0858.5
NC_011134:1854868:1869535186953518706171083Streptococcus equi subsp. zooepidemicus str. MGCS10565, completemicrocin self-immunity protein8e-0857.8