Pre_GI: BLASTP Hits

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Query: NC_008261:3014373:3025533 Clostridium perfringens ATCC 13124, complete genome

Start: 3025533, End: 3026477, Length: 945

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:2788268:280289328028932803837945Clostridium perfringens str. 13, complete genomeprobable transport protein0634
NC_008262:2649289:266734826673482668292945Clostridium perfringens SM101, complete genomemagnesium and cobalt transporter6e-180629
NC_010723:173280:207806207806208753948Clostridium botulinum E3 str. Alaska E43, complete genomemagnesium and cobalt transporter7e-139493
NC_010674:192951:205989205989206936948Clostridium botulinum B str. Eklund 17B, complete genomemagnesium and cobalt transporter1e-138492
NC_003030:303812:350221350221351168948Clostridium acetobutylicum ATCC 824, complete genomeMagnesium and cobalt transporter2e-120431
NC_015687:303810:350217350217351164948Clostridium acetobutylicum DSM 1731 chromosome, complete genomemagnesium/cobalt transporter CorA2e-120431
NC_012563:36000:775347753478475942Clostridium botulinum A2 str. Kyoto, complete genometransporter, CorA metal ion transporter family3e-119428
NC_010516:42475:832668326684207942Clostridium botulinum B1 str. Okra, complete genometransporter, CorA metal ion transporter family3e-119428
NC_009495:38000:836098360984550942Clostridium botulinum A str. ATCC 3502 chromosome, complete genometransporter CorA metal ion transporter family3e-119428
NC_009697:38000:764127641277353942Clostridium botulinum A str. ATCC 19397 chromosome, completeCorA family protein3e-119428
NC_009698:38000:764137641377354942Clostridium botulinum A str. Hall chromosome, complete genomeCorA family protein3e-119428
NC_009699:33452:783037830379244942Clostridium botulinum F str. Langeland chromosome, complete genomeCorA family protein3e-119428
NC_017297:33519:785717857179512942Clostridium botulinum F str. 230613 chromosome, complete genometransporter, CorA metal ion transporter family3e-119428
NC_010520:35845:773957739578336942Clostridium botulinum A3 str. Loch Maree, complete genometransporter, CorA metal ion transporter family2e-119428
NC_012658:35500:775127751278453942Clostridium botulinum Ba4 str. 657 chromosome, complete genometransporter, CorA metal ion transporter family2e-119428
NC_008593:2457594:245759424575942458544951Clostridium novyi NT, complete genomemagnesium transporter, CorA family3e-114411
NC_011837:3776541:377848437784843779425942Clostridium kluyveri NBRC 12016, complete genomehypothetical protein2e-113409
NC_009706:3845039:384698238469823847923942Clostridium kluyveri DSM 555 chromosome, complete genometransporter protein2e-113409
NC_015425:2690448:269245826924582693408951Clostridium botulinum BKT015925 chromosome, complete genomeMg2+ transporter protein, CorA family protein4e-112404
NC_014328:85290:138868138868139809942Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative Mg2+ transporter protein1e-111402
NC_015275:3976631:399481339948133995748936Clostridium lentocellum DSM 5427 chromosome, complete genomeMg2 transporter protein CorA family protein2e-84312
NC_016894:377446:386766386766387695930Acetobacterium woodii DSM 1030 chromosome, complete genomemagnesium and cobalt transporter CorA15e-83307
NC_015052:1313311:131725813172581318208951Bifidobacterium longum subsp. infantis 157F, complete genomemagnesium and cobalt transport protein7e-80297
NC_013520:1905554:192383319238331924786954Veillonella parvula DSM 2008, complete genomeMg2 transporter protein CorA family protein9e-69260
NC_017068:1852708:185979318597931860746954Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative magnesium and cobalt transporter2e-66253
NC_012781:379200:380997380997381938942Eubacterium rectale ATCC 33656, complete genomeMg2+ and Co2+ transporter2e-65249
NC_014960:1697818:172126917212691722201933Anaerolinea thermophila UNI-1, complete genomemagnesium transporter protein6e-58224
NC_015164:2305415:230541523054152306341927Bacteroides salanitronis DSM 18170 chromosome, complete genomeMg2 transporter protein CorA family protein3e-50198
NC_016940:190986:211009211009211956948Saprospira grandis str. Lewin chromosome, complete genomeMg2 transporter protein CorA family protein1e-47190
NC_013887:1601730:160281616028161603769954Methanocaldococcus sp. FS406-22 chromosome, complete genomemagnesium and cobalt transport protein CorA8e-27121
NC_008527:611836:630539630539631420882Lactococcus lactis subsp. cremoris SK11, complete genomeMg2+ and Co2+ transporter2e-26120
NC_000909:963984:965086965086966039954Methanocaldococcus jannaschii DSM 2661, complete genomemagnesium and cobalt transport protein (corA)5e-26118
NC_014122:143446:143446143446144390945Methanocaldococcus infernus ME chromosome, complete genomemagnesium and cobalt transport protein CorA2e-25116
NC_013156:1182609:118260911826091183562954Methanocaldococcus fervens AG86, complete genomemagnesium and cobalt transport protein CorA3e-24112
NC_010999:2059738:206699420669942067902909Lactobacillus casei, complete genomeMagnesium transporter (Magnesium transporter CorA)1e-1894
NC_009656:115390:134256134256135224969Pseudomonas aeruginosa PA7 chromosome, complete genomemagnesium and cobalt transport protein CorA2e-1686.3
NC_013132:893849:8951008951008962241125Chitinophaga pinensis DSM 2588, complete genomemagnesium and cobalt transport protein CorA3e-1479.3
NC_015379:2751342:276124927612492762199951Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative cation transporter, membrane protein2e-1376.6
NC_007492:2994036:299681429968142997737924Pseudomonas fluorescens PfO-1, complete genomeMg2+ transporter protein, CorA-like2e-1376.6
NC_015846:1065692:1087455108745510885461092Capnocytophaga canimorsus Cc5 chromosome, complete genomemagnesium transport protein corA3e-1376.3
NC_008255:4208913:4229484422948442305601077Cytophaga hutchinsonii ATCC 33406, complete genomemagnesium and cobalt transport protein3e-1375.9
NC_000853:569576:5916735916735927281056Thermotoga maritima MSB8, complete genomedivalent cation transport-related protein1e-1170.9
NC_012883:636560:6430156430156441031089Thermococcus sibiricus MM 739, complete genomeMagnesium and cobalt transport protein CorA1e-1170.9
NC_015520:224136:237246237246238214969Mahella australiensis 50-1 BON chromosome, complete genomemagnesium and cobalt transport protein CorA3e-1169.7
NC_010546:553774:5537745537745549401167Cyanothece sp. ATCC 51142 chromosome circular, complete sequencemagnesium and cobalt transport protein4e-1168.9
NC_013642:323799:3458903458903469451056Thermotoga naphthophila RKU-10, complete genomemagnesium and cobalt transport protein CorA6e-1168.6
NC_018000:2054098:206095020609502061915966Sinorhizobium fredii USDA 257 chromosome, complete genomemetal ion transporter YfjQ6e-1168.6
NC_005085:1269787:1327397132739713284341038Chromobacterium violaceum ATCC 12472, complete genomemagnesium and cobalt transport protein2e-1067
NC_017277:3083494:3100637310063731017791143Synechocystis sp. PCC 6803, complete genomemagnesium/cobalt transport protein3e-1066.2
NC_000911:3075896:3101820310182031029621143Synechocystis sp. PCC 6803, complete genomemagnesium and cobalt transport protein3e-1066.2
NC_017188:753039:755486755486756445960Bacillus amyloliquefaciens TA208 chromosome, complete genomemagnesium and cobalt transport protein CorA6e-1065.1
NC_014551:809025:811471811471812430960Bacillus amyloliquefaciens DSM 7, complete genomemagnesium transport in/out via permease (no H+)6e-1065.1
NC_017191:754453:756900756900757745846Bacillus amyloliquefaciens XH7 chromosome, complete genomedivalent cation transport protein7e-1065.1
NC_017190:794820:797267797267798112846Bacillus amyloliquefaciens LL3 chromosome, complete genomemagnesium transport in/out via permease (no H+)7e-1065.1
UCMB5137:409500:410243410243411202960Bacillus atrophaeus UCMB-5137putative divalent cation transport protein4e-0962.4
NC_013406:1145268:116547811654781166434957Paenibacillus sp. Y412MC10 chromosome, complete genomemagnesium and cobalt transport protein CorA3e-0859.7
NC_013741:1037176:1039350103935010403811032Archaeoglobus profundus DSM 5631, complete genomemagnesium and cobalt transport protein CorA4e-0858.9
NC_009483:4015777:4019538401953840206051068Geobacter uraniireducens Rf4 chromosome, complete genomemagnesium and cobalt transport protein CorA5e-0858.5
NC_020409:2856481:2893203289320328942671065Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeMagnesium and cobalt transport protein CorA7e-0858.5
NC_018664:2279687:2284369228436922854331065Clostridium acidurici 9a chromosome, complete genomemagnesium and cobalt transport protein CorA1e-0757.8
NC_009481:1109324:1119229111922911203831155Synechococcus sp. WH 7803 chromosome, complete genomeMg2+/Co2+ transporter2e-0757
NC_014935:1223817:123735212373521238287936Nitratifractor saLSUginis DSM 16511 chromosome, complete genomemg2 transporter protein cora family protein3e-0756.6
NC_010516:2777205:278716327871632788098936Clostridium botulinum B1 str. Okra, complete genomeputative magnesium and cobalt transport protein CorA4e-0755.8
NC_014221:78500:989079890799905999Truepera radiovictrix DSM 17093 chromosome, complete genomeMg2 transporter protein CorA family protein5e-0755.5
NC_017187:1564403:156499815649981565951954Arcobacter butzleri ED-1, complete genomemagnesium and cobalt transport protein9e-0754.7
NC_021064:1789980:1791566179156617925851020Propionibacterium avidum 44067, complete genomeMg2+/Co2+ transporter1e-0654.3
NC_010520:2807429:281765128176512818586936Clostridium botulinum A3 str. Loch Maree, complete genomeputative magnesium and cobalt transport protein CorA1e-0653.9
NC_008344:554229:5707545707545717551002Nitrosomonas eutropha C91, complete genomemagnesium and cobalt transport protein CorA3e-0653.1
NC_014205:760428:776669776669777487819Staphylothermus hellenicus DSM 12710 chromosome, complete genomeMg2 transporter protein CorA family protein3e-0652.8
NC_019673:895418:9145009145009155821083Saccharothrix espanaensis DSM 44229 complete genomeMagnesium and cobalt transport protein, CorA family3e-0652.8
NC_017317:1173619:1179831117983111809041074Corynebacterium ulcerans 809 chromosome, complete genomehypothetical protein4e-0652.4
NC_015683:1176449:1182661118266111837341074Corynebacterium ulcerans BR-AD22 chromosome, complete genomehypothetical protein4e-0652.4