Pre_GI: BLASTP Hits

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Query: NC_008261:3014373:3019343 Clostridium perfringens ATCC 13124, complete genome

Start: 3019343, End: 3020266, Length: 924

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:2788268:279670327967032797626924Clostridium perfringens str. 13, complete genomeDNA polymerase III subunits gamma and tau2e-164578
NC_008262:2649289:266115826611582662081924Clostridium perfringens SM101, complete genomeDNA polymerase III, delta prime subunit, putative6e-164576
NC_010674:192951:210530210530211462933Clostridium botulinum B str. Eklund 17B, complete genomeDNA polymerase III subunits gamma and tau2e-68259
NC_010723:173280:212347212347213279933Clostridium botulinum E3 str. Alaska E43, complete genomeDNA polymerase III subunits gamma and tau1e-66253
NC_014328:85290:142931142931143875945Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeDNA polymerase-like protein5e-65248
NC_003030:303812:355339355339356283945Clostridium acetobutylicum ATCC 824, complete genomeDNA polymerase III subunits gamma and tau9e-59227
NC_015687:303810:355335355335356279945Clostridium acetobutylicum DSM 1731 chromosome, complete genomeDNA polymerase III subunit delta'9e-59227
NC_010321:2207364:220972322097232210697975Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completeDNA polymerase III subunit delta'2e-30132
NC_009089:4140764:414331241433124144247936Clostridium difficile 630, complete genomeputative DNA polymerase III, delta' subunit3e-29129
NC_013316:4018451:402172640217264022661936Clostridium difficile R20291, complete genomeputative DNA polymerase III, delta' subunit3e-29129
NC_012778:2997:249002490025895996Eubacterium eligens ATCC 27750, complete genomeDNA polymerase7e-29127
NC_015555:49842:898208982090779960Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeDNA polymerase III, delta prime subunit9e-27120
NC_015275:1:2046820468214871020Clostridium lentocellum DSM 5427 chromosome, complete genomeDNA polymerase III, delta prime subunit2e-25116
NC_006177:3457637:347597534759753476973999Symbiobacterium thermophilum IAM 14863, complete genomeDNA polymerase III delta' subunit3e-1789.4
NC_014654:391201:403080403080404069990Halanaerobium sp. 'sapolanicus' chromosome, complete genomeDNA polymerase III, delta prime subunit4e-1789
NC_014314:576465:6644416644416654601020Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeDNA-directed DNA polymerase subunit delta'1e-1584
NC_014219:25845:462994629947291993Bacillus selenitireducens MLS10 chromosome, complete genomeDNA polymerase III, delta prime subunit5e-1478.6
NC_010381:35408:4359843598455081911Lysinibacillus sphaericus C3-41 plasmid pBsph, complete sequenceDNA polymerase III subunit gamma/tau5e-1478.6
NC_012121:113912:129474129474130400927Staphylococcus carnosus subsp. carnosus TM300, complete genomeputative DNA polymerase III, delta' subunit7e-1375.1
NC_010556:26567:431574315744149993Exiguobacterium sibiricum 255-15, complete genomeDNA-directed DNA polymerase1e-1170.9
NC_021064:2001786:2021960202196020232161257Propionibacterium avidum 44067, complete genomeDNA polymerase III subunit delta'2e-1170.1
NC_011726:1605600:162428116242811625240960Cyanothece sp. PCC 8801, complete genomeDNA polymerase III, delta prime subunit2e-1169.7
NC_008346:36176:533685336854330963Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeDNA polymerase III, delta prime subunit5e-1168.9
NC_011567:1:367553675537753999Anoxybacillus flavithermus WK1, complete genomeATPase involved in DNA replication HolB8e-1168.2
NC_017208:1:364713647137454984Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeDNA polymerase III subunit delta'7e-1168.2
NC_005070:2133380:213443421344342135378945Synechococcus sp. WH 8102, complete genomeDNA polymerase III subunit delta6e-1168.2
NC_014171:1:369183691837901984Bacillus thuringiensis BMB171 chromosome, complete genomeDNA polymerase III subunit delta'1e-1067.8
NC_013131:9711508:9728400972840097295871188Catenulispora acidiphila DSM 44928, complete genomeDNA-directed DNA polymerase1e-1067.4
NC_013123:78786:9316193161942041044Candidatus Sulcia muelleri SMDSEM, complete genomeN terminal region of DNA polymerase III, gamma subunit1e-1067.4
NC_004193:35698:403784037841367990Oceanobacillus iheyensis HTE831, complete genomeDNA polymerase III subunit delta1e-1067.4
NC_017186:9604427:9636233963623396374381206Amycolatopsis mediterranei S699 chromosome, complete genomeDNA polymerase III subunit delta'2e-1067
NC_015672:101878:106715106715107587873Flexistipes sinusarabici DSM 4947 chromosome, complete genomeDNA-directed DNA polymerase2e-1067
NC_007484:1823751:1853043185304318540561014Nitrosococcus oceani ATCC 19707, complete genomeDNA polymerase III subunit delta4e-1065.9
NC_016112:2301023:231549623154962316485990Methylomicrobium alcaliphilum chromosome, complete genomeDNA polymerase III, delta prime subunit4e-1065.9
NC_015738:873653:8863658863658886412277Eggerthella sp. YY7918, complete genomeDNA polymerase III8e-1064.7
NC_008789:7347:6316631673711056Halorhodospira halophila SL1, complete genomeDNA polymerase III, delta prime subunit1e-0964.3
NC_014831:65408:807698076981767999Thermaerobacter marianensis DSM 12885 chromosome, complete genomehypothetical protein1e-0963.9
NC_010634:2810815:2827348282734828283701023Yersinia pseudotuberculosis PB1/+, complete genomeDNA polymerase III, delta prime subunit2e-0963.5
NC_006155:2893802:2910336291033629113581023Yersinia pseudotuberculosis IP 32953, complete genomeDNA polymerase III subunit delta2e-0963.5
NC_017243:3141500:3143225314322531448021578Brachyspira intermedia PWS/A chromosome, complete genomeDNA polymerase III subunits gamma and tau2e-0963.5
NC_012225:2198987:2213988221398822155711584Brachyspira hyodysenteriae WA1, complete genomeDNA polymerase III, gamma and tau subunits2e-0963.5
NC_014499:87528:9889898898999411044Candidatus Sulcia muelleri CARI chromosome, complete genomeDNA polymerase III subunit gamma2e-0963.5
NC_013450:448054:4637154637154654121698Staphylococcus aureus subsp. aureus ED98, complete genomeDNA polymerase III, gamma and tau subunits2e-0963.2
NC_017337:498688:5143495143495160461698Staphylococcus aureus subsp. aureus ED133 chromosome, completeDNA polymerase III subunits gamma and tau3e-0963.2
NC_003923:473743:4879734879734896701698Staphylococcus aureus subsp. aureus MW2, complete genomeDNA polymerase III gamma and tau subunits3e-0962.8
NC_019908:2068631:2101961210196121035261566Brachyspira pilosicoli P43/6/78 chromosome, complete genomeDNA polymerase III subunits gamma and tau3e-0962.8
NC_014330:1113145:1113854111385411154191566Brachyspira pilosicoli 95/1000 chromosome, complete genomeDNA polymerase III subunits gamma and tau3e-0962.8
NC_018604:2579000:2579067257906725806321566Brachyspira pilosicoli WesB complete genomeDNA polymerase III subunits gamma and tau3e-0962.8
NC_010162:2406976:242768624276862428681996Sorangium cellulosum 'So ce 56', complete genomeDNA polymerase III delta' subunit3e-0962.8
NC_002952:494500:5105575105575122541698Staphylococcus aureus subsp. aureus MRSA252, complete genomeDNA polymerase III, tau subunit3e-0962.8
NC_002745:487500:5025945025945042911698Staphylococcus aureus subsp. aureus N315, complete genomeDNA polymerase III gamma and tau subunits3e-0962.8
NC_002758:511247:5269085269085286051698Staphylococcus aureus subsp. aureus Mu50, complete genomeDNA polymerase III gamma and tau subunits3e-0962.8
NC_009487:522193:5378545378545395511698Staphylococcus aureus subsp. aureus JH9 chromosome, completeDNA polymerase III subunits gamma and tau3e-0962.8
NC_009632:522264:5379255379255396221698Staphylococcus aureus subsp. aureus JH1 chromosome, completeDNA polymerase III subunits gamma and tau3e-0962.8
NC_012704:2296500:2297041229704122983991359Corynebacterium kroppenstedtii DSM 44385, complete genomeDNA polymerase III, delta' subunit4e-0962.4
NC_007412:110698:111654111654112577924Anabaena variabilis ATCC 29413 plasmid C, complete sequenceDNA polymerase III subunit delta5e-0962
NC_014923:3930669:3932310393231039333651056Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeDNA polymerase III, delta prime subunit7e-0961.6
NC_013520:1860286:1866713186671318694002688Veillonella parvula DSM 2008, complete genomeDNA polymerase III, subunits gamma and tau7e-0961.6
NC_007164:2261644:2276030227603022772771248Corynebacterium jeikeium K411, complete genomeDNA polymerase III, delta' subunit8e-0961.2
NC_017338:470993:4860024860024876991698Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeDNA-directed DNA polymerase III subunit gamma and tau8e-0961.2
NC_008346:36176:3617636176376751500Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeDNA-directed DNA polymerase2e-0860.5
NC_020411:1232962:1234644123464412357831140Hydrogenobaculum sp. HO, complete genomeDNA polymerase III, subunits gamma and tau2e-0860.5
NC_015557:1232772:1234308123430812355941287Hydrogenobaculum sp. 3684 chromosome, complete genomeDNA polymerase III, subunits gamma and tau2e-0860.1
NC_012673:1650139:165324516532451654237993Exiguobacterium sp. AT1b, complete genomeDNA-directed DNA polymerase2e-0860.1
NC_015587:1232642:1234178123417812354641287Hydrogenobaculum sp. SHO chromosome, complete genomeDNA polymerase III, subunits gamma and tau2e-0860.1
NC_015913:1491393:153016215301621530980819Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomeDNA polymerase III subunit delta'2e-0860.1
NC_011126:1241655:1243191124319112444561266Hydrogenobaculum sp. Y04AAS1, complete genomeDNA polymerase III, subunits gamma and tau2e-0859.7
NC_016513:317197:317197317197318180984Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeDNA polymerase III subunit delta'3e-0859.7
NC_007333:3244572:3263171326317132643431173Thermobifida fusca YX, complete genomeDNA polymerase III delta prime subunit6e-0858.5
NC_014654:391201:3963813963813981891809Halanaerobium sp. 'sapolanicus' chromosome, complete genomeDNA polymerase III, subunits gamma and tau8e-0858.2
NC_010644:1540249:155572115557211556683963Elusimicrobium minutum Pei191, complete genomeDNA polymerase III, delta prime subunit1e-0757.8
NC_010418:138325:1383251383251397401416Clostridium botulinum A3 str. Loch Maree plasmid pCLK, completeDNA polymerase III, subunits gamma and tau9e-0857.8
NC_010379:6880:8417841798351419Clostridium botulinum B1 str. Okra plasmid pCLD, complete sequenceDNA polymerase III, subunits gamma and tau1e-0757.4
NC_006055:769418:7876507876507895451896Mesoplasma florum L1, complete genomeDNA polymerase III gamma and tau subunits1e-0757.4
NC_012654:92487:9575695756971741419Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequenceDNA polymerase III, subunits gamma and tau1e-0757
NC_017167:129988:1318871318871336441758Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1DNA polymerase III subunits gamma and tau2e-0757
NC_008618:200017:2228202228202239681149Bifidobacterium adolescentis ATCC 15703, complete genomepossible DNA polymerase III delta prime subunit2e-0757
NC_013171:1194500:121149912114991212284786Anaerococcus prevotii DSM 20548, complete genomeDNA polymerase III gamma/tau subunits-like protein3e-0756.2
NC_017238:482222:4851464851464868461701Borrelia afzelii PKo chromosome, complete genomeDNA polymerase III subunits gamma and tau4e-0755.8
NC_008277:485299:4865874865874882871701Borrelia afzelii PKo, complete genomeDNA polymerase III, subunits gamma and tau4e-0755.8
NC_021182:93000:9652896528981561629Clostridium pasteurianum BC1, complete genomeDNA polymerase III, subunit gamma/tau4e-0755.8
NC_016510:2049500:2050849205084920519971149Flavobacterium columnare ATCC 49512 chromosome, complete genomeDNA polymerase III, delta prime subunit4e-0755.5
NC_014933:270000:2855972855972874321836Bacteroides helcogenes P 36-108 chromosome, complete genomeDNA polymerase III, tau subunit6e-0755.1
NC_009053:2025782:203871320387132039696984Actinobacillus pleuropneumoniae L20, complete genomeDNA polymerase III subunit delta6e-0755.1
NC_017208:1:2539825398270861689Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeDNA polymerase III subunits gamma and tau7e-0755.1
NC_012121:113912:1184171184171201681752Staphylococcus carnosus subsp. carnosus TM300, complete genomeDNA polymerase III gamma and tau subunits8e-0754.7
NC_010939:2085000:209587020958702096853984Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeDNA polymerase III subunit delta8e-0754.7
NC_010278:1989500:200039820003982001381984Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,DNA polymerase III subunit delta'8e-0754.7
NC_008786:557314:5769895769895788331845Verminephrobacter eiseniae EF01-2, complete genomeDNA polymerase III, subunits gamma and tau8e-0754.7
NC_013037:3994083:4011359401135940124771119Dyadobacter fermentans DSM 18053, complete genomeDNA polymerase III gamma/tau subunit7e-0754.7
NC_009092:2589000:2611845261184526151863342Shewanella loihica PV-4, complete genomeDNA polymerase III, subunits gamma and tau1e-0653.9
NC_006156:484951:4849514849514866331683Borrelia garinii PBi chromosome linear, complete sequenceDNA polymerase III subunits gamma and tau1e-0653.9
NC_010830:384812:3865683865683884571890Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-0653.5
NC_016109:3963189:3991349399134939925541206Kitasatospora setae KM-6054, complete genomeputative DNA polymerase III subunit delta'2e-0653.5
NC_008532:469888:474486474486475361876Streptococcus thermophilus LMD-9, complete genomeATPase involved in DNA replication2e-0653.1
NC_006448:465656:470268470268471143876Streptococcus thermophilus LMG 18311, complete genomeDNA polymerase III subunit delta2e-0653.1
NC_015913:35837:4048040480419611482Candidatus Arthromitus sp. SFB-mouse-Japan, complete genomeDNA polymerase III subunits gamma and tau3e-0652.8
NC_014355:243543:2472142472142490911878Candidatus Nitrospira defluvii, complete genomeDNA polymerase III subunit gamma/tau4e-0652.4
NC_014253:1954024:197248819724881973444957Methanohalobium evestigatum Z-7303 chromosome, complete genomereplication factor C6e-0652
NC_016147:2337244:2339290233929023412061917Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeDNA polymerase III subunits gamma and tau5e-0652
NC_015389:481282:5009695009695021111143Coriobacterium glomerans PW2 chromosome, complete genomeDNA polymerase III, delta prime subunit5e-0652
NC_015496:3256372:3256372325637232582761905Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeDNA polymerase III, subunits gamma and tau7e-0651.6
NC_014410:51711:5365953659552601602Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,DNA polymerase III, subunits gamma and tau8e-0651.2
NC_019970:35985:3858838588401891602Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeDNA polymerase III, subunit gamma/tau8e-0651.2
NC_015921:481532:4815324815324832141683Borrelia bissettii DN127 chromosome, complete genomeDNA polymerase III, subunits gamma and tau9e-0651.2
NC_018721:2017737:2018998201899820201371140Psychroflexus torquis ATCC 700755 chromosome, complete genomeDNA polymerase III delta prime subunit HolB1e-0551.2