Pre_GI: BLASTP Hits

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Query: NC_008261:2743942:2760729 Clostridium perfringens ATCC 13124, complete genome

Start: 2760729, End: 2761259, Length: 531

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016894:2809125:282601128260112826556546Acetobacterium woodii DSM 1030 chromosome, complete genomeheptaprenyl diphosphate synthase component I1e-1272.4
NC_010163:63209:653476534765856510Acholeplasma laidlawii PG-8A chromosome, complete genomeintegral membrane protein5e-0753.9
NC_009633:2350892:235614123561412356662522Alkaliphilus metalliredigens QYMF chromosome, complete genomeheptaprenyl diphosphate synthase component I1e-1686.3
NC_009697:419443:428763428763429299537Clostridium botulinum A str. ATCC 19397 chromosome, completehypothetical protein2e-21101
NC_008261:2614817:262700226270022627517516Clostridium perfringens ATCC 13124, complete genomehypothetical protein1e-1168.9
NC_009012:686740:690422690422690934513Clostridium thermocellum ATCC 27405, complete genomeHeptaprenyl diphosphate synthase component I1e-1375.9
NC_015589:814530:821347821347821856510Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeHeptaprenyl diphosphate synthase component I1e-1582.4
NC_011661:1100576:111954111195411120074534Dictyoglomus turgidum DSM 6724, complete genomeHeptaprenyl diphosphate synthase component I1e-0755.8
NC_017316:2637707:266037326603732660930558Enterococcus faecalis OG1RF chromosome, complete genomeheptaprenyl diphosphate synthase component I2e-31134
NC_004668:3118500:313771431377143138271558Enterococcus faecalis V583, complete genomehypothetical protein2e-31134
NC_008555:2597980:261928026192802619822543Listeria welshimeri serovar 6b str. SLCC5334, complete genomeputative secreted protein4e-32137
NC_010718:517473:535706535706536239534Natranaerobius thermophilus JW/NM-WN-LF, complete genomeHeptaprenyl diphosphate synthase component I5e-1787.4
NC_010003:1577934:157743215774321577953522Petrotoga mobilis SJ95, complete genomeHeptaprenyl diphosphate synthase component I1e-1272.8