Pre_GI: BLASTP Hits

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Query: NC_008261:2743942:2754056 Clostridium perfringens ATCC 13124, complete genome

Start: 2754056, End: 2755060, Length: 1005

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008593:2250871:2250871225087122518811011Clostridium novyi NT, complete genomespore coat protein5e-120431
NC_010516:127000:1501521501521511561005Clostridium botulinum B1 str. Okra, complete genomespore coat protein CotS4e-118424
NC_009698:120119:1431651431651441691005Clostridium botulinum A str. Hall chromosome, complete genomespore coat protein CotS1e-117423
NC_009697:120117:1431631431631441671005Clostridium botulinum A str. ATCC 19397 chromosome, completespore coat protein CotS1e-117423
NC_015949:1887478:188833318883331889325993Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomespore coat protein, CotS family1e-56220
NC_008593:2250871:2265569226556922665821014Clostridium novyi NT, complete genomespore coat protein S, putative1e-32140
NC_010516:127000:1455151455151465251011Clostridium botulinum B1 str. Okra, complete genomeputative spore coat protein3e-32139
NC_010520:121077:1395061395061405161011Clostridium botulinum A3 str. Loch Maree, complete genomeputative spore coat protein9e-32137
NC_012658:125500:1431641431641441741011Clostridium botulinum Ba4 str. 657 chromosome, complete genomeputative spore coat protein1e-31137
NC_009699:122000:1405311405311415411011Clostridium botulinum F str. Langeland chromosome, complete genomespore coat protein2e-31136
NC_017297:122383:1407951407951418051011Clostridium botulinum F str. 230613 chromosome, complete genomeCotS family spore coat protein2e-31136
NC_008261:2743942:2758214275821427592211008Clostridium perfringens ATCC 13124, complete genomeputative spore coat protein4e-30132
NC_010516:127000:1475411475411485541014Clostridium botulinum B1 str. Okra, complete genomeputative spore coat protein7e-30131
NC_009698:120119:1385271385271395371011Clostridium botulinum A str. Hall chromosome, complete genomespore coat protein9e-30131
NC_009697:120117:1385251385251395351011Clostridium botulinum A str. ATCC 19397 chromosome, completespore coat protein9e-30131
NC_009495:128000:1457221457221467321011Clostridium botulinum A str. ATCC 3502 chromosome, complete genomespore coat protein9e-30131
NC_012563:122000:1396581396581406681011Clostridium botulinum A2 str. Kyoto, complete genomespore coat protein, CotS family9e-30131
NC_008593:2250871:226371322637132264684972Clostridium novyi NT, complete genomespore coat protein S, putative4e-29129
NC_010520:121077:1415321415321425451014Clostridium botulinum A3 str. Loch Maree, complete genomeputative spore coat protein5e-29128
NC_012563:122000:1416841416841426971014Clostridium botulinum A2 str. Kyoto, complete genomespore coat protein, CotS family4e-29128
NC_012658:125500:1451901451901462031014Clostridium botulinum Ba4 str. 657 chromosome, complete genomeputative spore coat protein1e-28127
NC_009699:122000:1425571425571435701014Clostridium botulinum F str. Langeland chromosome, complete genomespore coat protein1e-28127
NC_009495:128000:1477481477481487611014Clostridium botulinum A str. ATCC 3502 chromosome, complete genomespore coat protein1e-28127
NC_009697:120117:1405511405511415641014Clostridium botulinum A str. ATCC 19397 chromosome, completespore coat protein1e-28127
NC_009698:120119:1405531405531415661014Clostridium botulinum A str. Hall chromosome, complete genomespore coat protein1e-28127
NC_017297:122383:142821142821143807987Clostridium botulinum F str. 230613 chromosome, complete genomeCotS family spore coat protein2e-28126
NC_020291:1045058:1066248106624810673121065Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomespore coat protein CotS3e-23109
NC_008262:2169262:2185546218554621866251080Clostridium perfringens SM101, complete genomehypothetical protein1e-22107
NC_021182:2219286:2224360222436022254121053Clostridium pasteurianum BC1, complete genomespore coat protein, CotS family1e-21104
NC_003366:2286083:2302395230239523034741080Clostridium perfringens str. 13, complete genomeprobable spore coat protein9e-22104
NC_008261:2743942:2756479275647927575071029Clostridium perfringens ATCC 13124, complete genomeputative spore coat protein8e-22104
NC_021182:2667408:2684796268479626858421047Clostridium pasteurianum BC1, complete genomespore coat protein, CotS family3e-1892.8
NC_014393:1782811:1794836179483617959061071Clostridium cellulovorans 743B chromosome, complete genomespore coat protein, CotS family5e-1685.5
NC_015949:1887478:1890331189033118913321002Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomespore coat protein, CotS family6e-1375.1
NC_015660:1988000:1989515198951519906091095Geobacillus thermoglucosidasius C56-YS93 chromosome, completespore coat protein, CotS family6e-1168.6
NC_014650:1942935:1951363195136319524571095Geobacillus sp. Y4.1MC1 chromosome, complete genomespore coat protein, CotS family1e-1067.4
NC_015949:1887478:188937218893721890340969Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomehypothetical protein2e-0653.5