Pre_GI: BLASTP Hits

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Query: NC_008261:1048515:1058285 Clostridium perfringens ATCC 13124, complete genome

Start: 1058285, End: 1059172, Length: 888

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:1091766:110152711015271102414888Clostridium perfringens str. 13, complete genomeethanolamine ammonia-lyase small subunit8e-161566
NC_015275:4493500:450159045015904502513924Clostridium lentocellum DSM 5427 chromosome, complete genomeEthanolamine ammonia-lyase4e-120431
NC_017179:2067015:207656020765602077441882Clostridium difficile BI1, complete genomeethanolamine ammonia-lyase small subunit2e-117422
NC_013315:2059007:206855220685522069433882Clostridium difficile CD196 chromosome, complete genomeethanolamine ammonia-lyase small subunit2e-117422
NC_014376:1586649:159714815971481598053906Clostridium saccharolyticum WM1 chromosome, complete genomeEthanolamine ammonia-lyase2e-104379
NC_009922:868262:875415875415876326912Alkaliphilus oremlandii OhILAs, complete genomeEthanolamine ammonia-lyase4e-103374
NC_004557:2289135:230094423009442301828885Clostridium tetani E88, complete genomeethanolamine ammonia-lyase small subunit1e-90333
NC_014654:2277461:228832322883232289201879Halanaerobium sp. 'sapolanicus' chromosome, complete genomeEthanolamine ammonia-lyase1e-89329
NC_013517:1055854:113620911362091137108900Sebaldella termitidis ATCC 33386, complete genomeEthanolamine ammonia-lyase6e-89327
NC_014614:284005:295097295097295981885Clostridium sticklandii, complete genomeEthanolamine ammonia-lyase light chain (Ethanolamine ammonia-lyase small subunit)5e-86317
NC_013192:63111:703557035571296942Leptotrichia buccalis DSM 1135, complete genomeEthanolamine ammonia-lyase1e-84313
NC_009633:286677:296244296244297143900Alkaliphilus metalliredigens QYMF chromosome, complete genomeethanolamine ammonia-lyase small subunit2e-84312
NC_016584:1998000:202526020252602026141882Desulfosporosinus orientis DSM 765 chromosome, complete genomeethanolamine ammonia-lyase, small subunit1e-74279
NC_009253:1381401:138801813880181388956939Desulfotomaculum reducens MI-1 chromosome, complete genomeethanolamine ammonia-lyase small subunit1e-72273
NC_020291:795500:797005797005797775771Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeethanolamine ammonia-lyase light chain1e-68259
NC_016584:1714507:172801217280121728920909Desulfosporosinus orientis DSM 765 chromosome, complete genomeethanolamine ammonia-lyase, small subunit1e-68259
NC_018515:1663912:168216716821671683075909Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeethanolamine ammonia-lyase, small subunit5e-68258
NC_014019:3543389:3554762355476235557871026Bacillus megaterium QM B1551 chromosome, complete genomeethanolamine ammonia-lyase light chain7e-64244
NC_017068:1327025:132624613262461327028783Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative ethanolamine ammonia-lyase light chain5e-63241
NC_012491:5914500:592958259295825930523942Brevibacillus brevis NBRC 100599, complete genomeprobable ethanolamine ammonia-lyase light chain4e-62238
NC_010468:1343228:135907913590791359966888Escherichia coli ATCC 8739, complete genomeEthanolamine ammonia-lyase5e-59228
NC_018870:705900:724958724958725815858Thermacetogenium phaeum DSM 12270 chromosome, complete genomeethanolamine ammonia-lyase light chain2e-55216
NC_009937:4090404:409178940917894092562774Azorhizobium caulinodans ORS 571, complete genomeethanolamine ammonia-lyase small subunit6e-32138
NC_004129:6240904:624732962473296248153825Pseudomonas fluorescens Pf-5, complete genomeethanolamine ammonia-lyase small subunit9e-32137
NC_014734:183214:188190188190188993804Paludibacter propionicigenes WB4 chromosome, complete genomeethanolamine ammonia-lyase light chain3e-30132
NC_017986:3283433:329968132996813300499819Pseudomonas putida ND6 chromosome, complete genomeethanolamine ammonia-lyase small subunit3e-30132
NC_016830:5994494:599747359974735998297825Pseudomonas fluorescens F113 chromosome, complete genomeprotein EutC3e-30132
NC_015379:6023926:602704860270486027872825Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,ethanolamine ammonia-lyase, light chain1e-29130
NC_007651:3719191:373655937365593737350792Burkholderia thailandensis E264 chromosome I, complete sequenceethanolamine ammonia-lyase, light chain2e-28126
NC_020409:512861:526900526900527715816Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeEthanolamine ammonia-lyase light chain1e-27123
NC_008825:2564965:258329325832932584087795Methylibium petroleiphilum PM1, complete genomeEthanolamine ammonia-lyase2e-26119
NC_004129:6240904:6243676624367662458712196Pseudomonas fluorescens Pf-5, complete genomeethanolamine ammonia-lyase4e-24112