Pre_GI: BLASTN Hits

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Query: NC_008258:1750964 Shigella flexneri 5 str. 8401, complete genome

Start: 1750964, End: 1774111, Length: 23148

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004741:17924421792442181107618635Shigella flexneri 2a str. 2457T, complete genome013020BLASTN svgBLASTP svg
NC_007613:15330241533024155939726374Shigella boydii Sb227, complete genome012570BLASTN svgBLASTP svg
NC_009801:16787901678790170320124412Escherichia coli E24377A, complete genome09779BLASTN svgBLASTP svg
AP010958:17116561711656173552123866Escherichia coli O103:H2 str. 12009 DNA, complete genome09779BLASTN svgBLASTP svg
NC_010658:15931371593137161115518019Shigella boydii CDC 3083-94, complete genome09771BLASTN svgBLASTP svg
NC_004431:17546271754627177809923473Escherichia coli CFT073, complete genome09339BLASTN svgBLASTP svg
NC_007384:16968311696831171856121731Shigella sonnei Ss046, complete genome08312BLASTN svgBLASTP svg
NC_010473:16610001661000168573524736Escherichia coli str. K-12 substr. DH10B, complete genome08126BLASTN svgBLASTP svg
NC_000913:15704311570431159611025680Escherichia coli K12, complete genome08126BLASTN svgBLASTP svg
AC_000091:15740001574000159980025801Escherichia coli W3110 DNA, complete genome08126BLASTN svgBLASTP svg
CU928160:15793751579375160831928945Escherichia coli IAI1 chromosome, complete genome08094BLASTN svgBLASTP svg
NC_010468:23457812345781237145925679Escherichia coli ATCC 8739, complete genome08086BLASTN svgBLASTP svg
NC_011748:16847771684777170387419098Escherichia coli 55989, complete genome08062BLASTN svgBLASTP svg
CU928145:16847771684777170387419098Escherichia coli 55989 chromosome, complete genome08062BLASTN svgBLASTP svg
CP002516:23955782395578241927123694Escherichia coli KO11, complete genome08062BLASTN svgBLASTP svg
CP002185:16813271681327171027728951Escherichia coli W, complete genome08062BLASTN svgBLASTP svg
NC_009800:15890001589000161490825909Escherichia coli HS, complete genome08046BLASTN svgBLASTP svg
NC_002695:20918902091890211359921710Escherichia coli O157:H7 str. Sakai, complete genome07983BLASTN svgBLASTP svg
NC_002655:19664641966464198957123108Escherichia coli O157:H7 EDL933, complete genome07979BLASTN svgBLASTP svg
NC_010498:16593281659328168149222165Escherichia coli SMS-3-5, complete genome07824BLASTN svgBLASTP svg
NC_011750:18495611849561187012520565Escherichia coli IAI39 chromosome, complete genome07810BLASTN svgBLASTP svg
NC_011751:17703761770376179379823423Escherichia coli UMN026 chromosome, complete genome07745BLASTN svgBLASTP svg
NC_008253:15348401534840155611921280Escherichia coli 536, complete genome07666BLASTN svgBLASTP svg
NC_007946:16320251632025165817126147Escherichia coli UTI89, complete genome07642BLASTN svgBLASTP svg
NC_008563:16209431620943164109920157Escherichia coli APEC O1, complete genome07634BLASTN svgBLASTP svg
NC_009800:3685651*3685651370909923449Escherichia coli HS, complete genome02454BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome02438BLASTN svgBLASTP svg
NC_000913:3624826*3624826366560340778Escherichia coli K12, complete genome02430BLASTN svgBLASTP svg
AP010958:43134624313462433479021329Escherichia coli O103:H2 str. 12009 DNA, complete genome02422BLASTN svgBLASTP svg
CU928145:39834323983432403268849257Escherichia coli 55989 chromosome, complete genome02407BLASTN svgBLASTP svg
NC_011748:39834323983432403268849257Escherichia coli 55989, complete genome02407BLASTN svgBLASTP svg
NC_011740:15953811595381161679021410Escherichia fergusonii ATCC 35469, complete genome01701BLASTN svgBLASTP svg
NC_004741:4364235*4364235438964325409Shigella flexneri 2a str. 2457T, complete genome01532BLASTN svgBLASTP svg
NC_008258:3995553*3995553402149425942Shigella flexneri 5 str. 8401, complete genome01530BLASTN svgBLASTP svg
NC_004741:3992384*3992384401736124978Shigella flexneri 2a str. 2457T, complete genome01528BLASTN svgBLASTP svg
NC_008258:2045000*2045000206275017751Shigella flexneri 5 str. 8401, complete genome01528BLASTN svgBLASTP svg
NC_008258:35815833581583360816926587Shigella flexneri 5 str. 8401, complete genome01528BLASTN svgBLASTP svg
NC_008258:4345400*4345400436989824499Shigella flexneri 5 str. 8401, complete genome01526BLASTN svgBLASTP svg
NC_008258:17846371784637180559020954Shigella flexneri 5 str. 8401, complete genome01526BLASTN svgBLASTP svg
NC_004337:17836451783645180635922715Shigella flexneri 2a str. 301, complete genome01526BLASTN svgBLASTP svg
NC_004337:4374500*4374500439909924600Shigella flexneri 2a str. 301, complete genome01524BLASTN svgBLASTP svg
NC_008258:26980626980629518525380Shigella flexneri 5 str. 8401, complete genome01522BLASTN svgBLASTP svg
NC_004741:41320564132056415578223727Shigella flexneri 2a str. 2457T, complete genome01522BLASTN svgBLASTP svg
NC_004337:36219853621985364626824284Shigella flexneri 2a str. 301, complete genome01522BLASTN svgBLASTP svg
NC_004337:2185282*2185282220846123180Shigella flexneri 2a str. 301, complete genome01522BLASTN svgBLASTP svg
NC_004337:20359452035945205669020746Shigella flexneri 2a str. 301, complete genome01520BLASTN svgBLASTP svg
NC_004741:2169877*2169877219012220246Shigella flexneri 2a str. 2457T, complete genome01520BLASTN svgBLASTP svg
NC_008258:2190635*2190635221013919505Shigella flexneri 5 str. 8401, complete genome01518BLASTN svgBLASTP svg
NC_004741:41605004160500418981229313Shigella flexneri 2a str. 2457T, complete genome01515BLASTN svgBLASTP svg
NC_004741:20097692009769203209922331Shigella flexneri 2a str. 2457T, complete genome01515BLASTN svgBLASTP svg
NC_004337:3761865*3761865378609924235Shigella flexneri 2a str. 301, complete genome01515BLASTN svgBLASTP svg
NC_011750:3407500*3407500343726129762Escherichia coli IAI39 chromosome, complete genome01513BLASTN svgBLASTP svg
NC_004851:15767515767518009922425Shigella flexneri 2a str. 301 plasmid pCP301, complete sequence01511BLASTN svgBLASTP svg
NC_004337:36768736768739153023844Shigella flexneri 2a str. 301, complete genome01511BLASTN svgBLASTP svg
NC_007613:10380001038000106059922600Shigella boydii Sb227, complete genome01509BLASTN svgBLASTP svg
NC_007613:29818292981829300438522557Shigella boydii Sb227, complete genome01509BLASTN svgBLASTP svg
NC_007613:4217557*4217557425611838562Shigella boydii Sb227, complete genome01509BLASTN svgBLASTP svg
NC_008258:2905413*2905413292427518863Shigella flexneri 5 str. 8401, complete genome01509BLASTN svgBLASTP svg
NC_008258:32247213224721324719422474Shigella flexneri 5 str. 8401, complete genome01509BLASTN svgBLASTP svg
NC_010658:36226103622610364133018721Shigella boydii CDC 3083-94, complete genome01509BLASTN svgBLASTP svg
NC_004741:3041294*3041294310468963396Shigella flexneri 2a str. 2457T, complete genome01507BLASTN svgBLASTP svg
NC_007613:2699500*2699500272161822119Shigella boydii Sb227, complete genome01507BLASTN svgBLASTP svg
NC_007613:41197714119771413859918829Shigella boydii Sb227, complete genome01507BLASTN svgBLASTP svg
NC_008258:35505003550500357858028081Shigella flexneri 5 str. 8401, complete genome01507BLASTN svgBLASTP svg
NC_010660:175200*17520020478429585Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence01507BLASTN svgBLASTP svg
NC_004337:2747917*2747917277096123045Shigella flexneri 2a str. 301, complete genome01505BLASTN svgBLASTP svg
NC_008258:1076922*1076922110024923328Shigella flexneri 5 str. 8401, complete genome01503BLASTN svgBLASTP svg
NC_007613:34703143470314350909338780Shigella boydii Sb227, complete genome01503BLASTN svgBLASTP svg
NC_004337:3049118*3049118311609966982Shigella flexneri 2a str. 301, complete genome01503BLASTN svgBLASTP svg
NC_007613:76123476123478018918956Shigella boydii Sb227, complete genome01501BLASTN svgBLASTP svg
NC_007613:41568414156841418149124651Shigella boydii Sb227, complete genome01501BLASTN svgBLASTP svg
NC_004741:18230001823000184104318044Shigella flexneri 2a str. 2457T, complete genome01499BLASTN svgBLASTP svg
NC_008258:25428632542863256544822586Shigella flexneri 5 str. 8401, complete genome01499BLASTN svgBLASTP svg
NC_010658:3014371*3014371303259918229Shigella boydii CDC 3083-94, complete genome01499BLASTN svgBLASTP svg
NC_004741:36682236682238968922868Shigella flexneri 2a str. 2457T, complete genome01495BLASTN svgBLASTP svg
NC_010658:1193225*1193225121671123487Shigella boydii CDC 3083-94, complete genome01493BLASTN svgBLASTP svg
NC_007613:44030704403070442929526226Shigella boydii Sb227, complete genome01491BLASTN svgBLASTP svg
NC_007608:970929709212311926028Shigella boydii Sb227 plasmid pSB4_227, complete sequence01491BLASTN svgBLASTP svg
NC_002695:14179121417912143730119390Escherichia coli O157:H7 str. Sakai, complete genome01491BLASTN svgBLASTP svg
NC_002655:11039911103991112782323833Escherichia coli O157:H7 EDL933, complete genome01491BLASTN svgBLASTP svg
NC_010658:42573104257310427618618877Shigella boydii CDC 3083-94, complete genome01485BLASTN svgBLASTP svg
NC_010658:4494103*4494103451209917997Shigella boydii CDC 3083-94, complete genome01483BLASTN svgBLASTP svg
NC_004741:2741971*2741971276422322253Shigella flexneri 2a str. 2457T, complete genome01481BLASTN svgBLASTP svg
NC_009649:948719487111709922229Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,01475BLASTN svgBLASTP svg
NC_010658:2529033*2529033255581226780Shigella boydii CDC 3083-94, complete genome01471BLASTN svgBLASTP svg
AP010958:14725061472506149531022805Escherichia coli O103:H2 str. 12009 DNA, complete genome01469BLASTN svgBLASTP svg
NC_007606:15154031515403153810522703Shigella dysenteriae Sd197, complete genome01445BLASTN svgBLASTP svg
NC_004431:4270305*4270305431798947685Escherichia coli CFT073, complete genome01425BLASTN svgBLASTP svg
NC_009800:21560912156091218719031100Escherichia coli HS, complete genome01417BLASTN svgBLASTP svg
NC_004741:310382*31038233778027399Shigella flexneri 2a str. 2457T, complete genome01398BLASTN svgBLASTP svg
NC_010498:48560114856011487626620256Escherichia coli SMS-3-5, complete genome01352BLASTN svgBLASTP svg
NC_009790:42112421126914727036Escherichia coli E24377A plasmid pETEC_74, complete sequence01265BLASTN svgBLASTP svg
NC_007613:2376974*2376974240022423251Shigella boydii Sb227, complete genome01217BLASTN svgBLASTP svg
NC_010468:17750001775000180518230183Escherichia coli ATCC 8739, complete genome01205BLASTN svgBLASTP svg
NC_010468:906957*90695794803541079Escherichia coli ATCC 8739, complete genome01201BLASTN svgBLASTP svg
NC_010468:2406387*2406387242509318707Escherichia coli ATCC 8739, complete genome01201BLASTN svgBLASTP svg
NC_010468:3970995*3970995399406323069Escherichia coli ATCC 8739, complete genome01199BLASTN svgBLASTP svg
NC_010468:2699000*2699000272285223853Escherichia coli ATCC 8739, complete genome01197BLASTN svgBLASTP svg
NC_010468:4252940*4252940428159928660Escherichia coli ATCC 8739, complete genome01195BLASTN svgBLASTP svg
NC_011740:28599332859933288499725065Escherichia fergusonii ATCC 35469, complete genome01168BLASTN svgBLASTP svg
NC_014121:35538093553809358001526207Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete01114BLASTN svgBLASTP svg
NC_011749:34056*340565613322078Escherichia coli UMN026 plasmid p1ESCUM, complete sequence01112BLASTN svgBLASTP svg
NC_014107:17117017117019899927830Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A,01110BLASTN svgBLASTP svg
NC_009649:16907169074359926693Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN3,01104BLASTN svgBLASTP svg
NC_020260:88230788230791401031704Cronobacter sakazakii Sp291, complete genome01035BLASTN svgBLASTP svg
NC_007946:12805081280508130218721680Escherichia coli UTI89, complete genome01011BLASTN svgBLASTP svg
NC_007384:20074672007467203964532179Shigella sonnei Ss046, complete genome01009BLASTN svgBLASTP svg
NC_007384:2933625*2933625295770924085Shigella sonnei Ss046, complete genome01005BLASTN svgBLASTP svg
NC_007384:10860251086025111635930335Shigella sonnei Ss046, complete genome01003BLASTN svgBLASTP svg
NC_007384:16500*165004120424705Shigella sonnei Ss046, complete genome01003BLASTN svgBLASTP svg
NC_007384:307013*30701333111524103Shigella sonnei Ss046, complete genome01003BLASTN svgBLASTP svg
NC_007384:2251792*2251792227443422643Shigella sonnei Ss046, complete genome01001BLASTN svgBLASTP svg
NC_007384:13550601355060138217827119Shigella sonnei Ss046, complete genome01001BLASTN svgBLASTP svg
NC_007384:3151344*3151344317840127058Shigella sonnei Ss046, complete genome0999BLASTN svgBLASTP svg
NC_007384:3956465*3956465398127224808Shigella sonnei Ss046, complete genome0999BLASTN svgBLASTP svg
NC_007606:4182188*4182188420162219435Shigella dysenteriae Sd197, complete genome0999BLASTN svgBLASTP svg
NC_007384:33839833383983340296018978Shigella sonnei Ss046, complete genome0995BLASTN svgBLASTP svg
NC_007606:23530982353098237552222425Shigella dysenteriae Sd197, complete genome0991BLASTN svgBLASTP svg
NC_007384:40950164095016412229027275Shigella sonnei Ss046, complete genome0991BLASTN svgBLASTP svg
NC_007384:1320287*1320287134781127525Shigella sonnei Ss046, complete genome0991BLASTN svgBLASTP svg
NC_011750:3545466*3545466356309917634Escherichia coli IAI39 chromosome, complete genome0989BLASTN svgBLASTP svg
NC_010488:48868488687267123804Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequence0985BLASTN svgBLASTP svg
NC_007606:38427083842708386376421057Shigella dysenteriae Sd197, complete genome0985BLASTN svgBLASTP svg
CU928145:1300863*1300863132330622444Escherichia coli 55989 chromosome, complete genome0983BLASTN svgBLASTP svg
CU928145:41319244131924415503823115Escherichia coli 55989 chromosome, complete genome0983BLASTN svgBLASTP svg
NC_007384:17633751763375178359920225Shigella sonnei Ss046, complete genome0983BLASTN svgBLASTP svg
NC_007384:37417083741708376309921392Shigella sonnei Ss046, complete genome0983BLASTN svgBLASTP svg
NC_009800:26517302651730267629124562Escherichia coli HS, complete genome0983BLASTN svgBLASTP svg
NC_010498:10354061035406106309927694Escherichia coli SMS-3-5, complete genome0983BLASTN svgBLASTP svg
NC_011748:1300863*1300863132330622444Escherichia coli 55989, complete genome0983BLASTN svgBLASTP svg
NC_011748:41319244131924415503823115Escherichia coli 55989, complete genome0983BLASTN svgBLASTP svg
NC_007606:12091321209132122967220541Shigella dysenteriae Sd197, complete genome0979BLASTN svgBLASTP svg
NC_009800:29959582995958302338427427Escherichia coli HS, complete genome0979BLASTN svgBLASTP svg
NC_010473:24658442465844248995824115Escherichia coli str. K-12 substr. DH10B, complete genome0979BLASTN svgBLASTP svg
NC_010658:1772994*1772994179509922106Shigella boydii CDC 3083-94, complete genome0977BLASTN svgBLASTP svg
NC_009800:16575501657550168574228193Escherichia coli HS, complete genome0977BLASTN svgBLASTP svg
NC_014170:57954579548259924646Xenorhabdus nematophila ATCC 19061 plasmid XNC1_p, complete0975BLASTN svgBLASTP svg
NC_009800:2788164*2788164280740719244Escherichia coli HS, complete genome0975BLASTN svgBLASTP svg
NC_003909:4333097*4333097435652123425Bacillus cereus ATCC 10987, complete genome0975BLASTN svgBLASTP svg
NC_009786:43331433316409920769Escherichia coli E24377A plasmid pETEC_80, complete sequence0967BLASTN svgBLASTP svg
AC_000091:27332527332530179728473Escherichia coli W3110 DNA, complete genome0963BLASTN svgBLASTP svg
NC_000913:27207127207130179729727Escherichia coli K12, complete genome0963BLASTN svgBLASTP svg
NC_009648:838000*83800086209024091Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome0963BLASTN svgBLASTP svg
NC_010473:24742924742927209924671Escherichia coli str. K-12 substr. DH10B, complete genome0963BLASTN svgBLASTP svg
NC_011751:49925004992500501338720888Escherichia coli UMN026 chromosome, complete genome0963BLASTN svgBLASTP svg
NC_007607:870008700012362836629Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence0961BLASTN svgBLASTP svg
NC_007606:37551553755155377834323189Shigella dysenteriae Sd197, complete genome0961BLASTN svgBLASTP svg
NC_003384:15715815715818443827281Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid0961BLASTN svgBLASTP svg
NC_003198:4513900*4513900454590232003Salmonella enterica subsp. enterica serovar Typhi str. CT18,0961BLASTN svgBLASTP svg
NC_009801:48826844882684490824525562Escherichia coli E24377A, complete genome0926BLASTN svgBLASTP svg
NC_010410:36068263606826369540988584Acinetobacter baumannii AYE, complete genome0896BLASTN svgBLASTP svg
NC_003384:10903610903613209923064Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid0763BLASTN svgBLASTP svg
NC_007385:15751615751617664619131Shigella sonnei Ss046 plasmid pSS_046, complete sequence3e-52214BLASTN svgBLASTP svg
NC_015224:3892972*3892972393636443393Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,5e-48200BLASTN svgBLASTP svg
NC_009792:14797791479779150315123373Citrobacter koseri ATCC BAA-895, complete genome6e-35157BLASTN svgBLASTP svg
NC_012917:23627252362725238725724533Pectobacterium carotovorum subsp. carotovorum PC1, complete genome4e-30141BLASTN svgBLASTP svg
NC_021066:1393750*1393750141908425335Raoultella ornithinolytica B6, complete genome2e-25125BLASTN svgBLASTP svg
NC_020063:22300002230000227048640487Enterobacteriaceae bacterium strain FGI 57, complete genome8e-19103BLASTN svgBLASTP svg
NC_013716:16182491618249164307824830Citrobacter rodentium ICC168, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_012880:15852551585255161262427370Dickeya dadantii Ech703, complete genome5e-1797.6BLASTN svgBLASTP svg