Pre_GI: BLASTP Hits

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Query: NC_008258:4345400:4345400 Shigella flexneri 5 str. 8401, complete genome

Start: 4345400, End: 4346302, Length: 903

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:4417000:441717944171794418081903Shigella flexneri 2002017 chromosome, complete genomeminor fimbrial subunit, D-mannose specific adhesin3e-170597
NC_004337:4374500:437473343747334375635903Shigella flexneri 2a str. 301, complete genomeminor fimbrial subunit, D-mannose specific adhesin3e-170597
NC_004741:4364235:436582943658294366731903Shigella flexneri 2a str. 2457T, complete genomeminor fimbrial subunit, D-mannose specific adhesin3e-170597
AC_000091:4534935:455348845534884554390903Escherichia coli W3110 DNA, complete genomeminor component of type 1 fimbriae8e-170596
NC_000913:4528278:454683145468314547733903Escherichia coli K12, complete genomeminor component of type 1 fimbriae8e-170596
NC_011751:5070597:508816750881675089069903Escherichia coli UMN026 chromosome, complete genomeminor component of type 1 fimbriae8e-170596
NC_012759:4467288:448531644853164486218903Escherichia coli BW2952 chromosome, complete genomeminor component of type 1 fimbriae8e-170596
CP002185:4791811:481124948112494812151903Escherichia coli W, complete genomeputative fimbrial adhesin protein2e-169594
NC_010498:4930649:495343149534314954333903Escherichia coli SMS-3-5, complete genomeprotein FimH2e-169594
CU928160:4570498:460945046094504610352903Escherichia coli IAI1 chromosome, complete genomeminor component of type 1 fimbriae2e-169594
CP002516:4199133:420071942007194201621903Escherichia coli KO11, complete genomeFimH mannose-binding protein2e-169594
NC_011353:5455224:547734754773475478249903Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeprotein FimH2e-169594
NC_011741:4570498:460945046094504610352903Escherichia coli IAI1 chromosome, complete genomeminor component of type 1 fimbriae2e-169594
NC_013008:5411285:543340854334085434310903Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeminor fimbrial subunit, D-mannose specific adhesin2e-169594
NC_013364:5255700:528026952802695281171903Escherichia coli O111:H- str. 11128, complete genomeminor component FimH of type 1 fimbriae2e-169594
NC_013941:5219841:524198052419805242882903Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeadhesin2e-169594
NC_016822:4889656:491082949108294911731903Shigella sonnei 53G, complete genomeFimH mannose-binding protein2e-169594
NC_016902:4199133:420071942007194201621903Escherichia coli KO11FL chromosome, complete genomeFimH mannose-binding protein2e-169594
CP002797:4656327:467677346767734677675903Escherichia coli NA114, complete genomeMannose-specific adhesin FimH1e-168592
NC_012947:3883484:388348438834843884386903Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeFimH mannose-binding domain protein9e-169592
NC_012967:4510393:452972245297224530624903Escherichia coli B str. REL606 chromosome, complete genomeminor component of type 1 fimbriae9e-169592
NC_002695:5381576:540369954036995404601903Escherichia coli O157:H7 str. Sakai, complete genomeD-mannose specific adhesin8e-169592
NC_008253:4817864:485403648540364854947912Escherichia coli 536, complete genomeFimH protein precursor1e-168592
NC_011750:4978000:499626149962614997163903Escherichia coli IAI39 chromosome, complete genomeminor component of type 1 fimbriae2e-168591
NC_011742:4873351:489163148916314892533903Escherichia coli S88 chromosome, complete genomeminor component of type 1 fimbriae5e-168590
NC_004431:5123325:514352951435295144440912Escherichia coli CFT073, complete genomeFimH protein precursor5e-168590
NC_007946:4875997:491355549135554914457903Escherichia coli UTI89, complete genometype 1 fimbiral adhesin FimH6e-168590
NC_009801:4882684:490582749058274906729903Escherichia coli E24377A, complete genomeprotein FimH1e-167588
NC_013361:5580741:559732355973235598225903Escherichia coli O26:H11 str. 11368 chromosome, complete genomeminor component FimH of type 1 fimbriae3e-167587
NC_011745:5114500:5131367513136751331031737Escherichia coli ED1a chromosome, complete genomeouter membrane usher protein FimD/type 1 fimbriae minor component5e-151533
NC_007613:4403070:442258944225894423383795Shigella boydii Sb227, complete genomeminor fimbrial subunit1e-149529
NC_010694:3178842:318929431892943190208915Erwinia tasmaniensis, complete genomeMinor fimbrial subunit, D-mannose specific adhesin (FimH)3e-106384
NC_002655:1966464:197949319794931980407915Escherichia coli O157:H7 EDL933, complete genomeputative adhesin; similar to FimH protein1e-70266
NC_002695:2091890:210806521080652108979915Escherichia coli O157:H7 str. Sakai, complete genomeputative adhesin1e-70266
NC_011353:2004800:202266620226662023580915Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeFimH-like protein1e-70266
NC_013008:2007228:202164220216422022556915Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeF9 fimbriae adhesin1e-70266
NC_013941:1894496:191236319123631913277915Escherichia coli O55:H7 str. CB9615 chromosome, complete genometranscriptional regulator BolA1e-70266
AC_000091:1574000:158853415885341589448915Escherichia coli W3110 DNA, complete genomepredicted fimbrial-like adhesin protein7e-70264
NC_010473:1661000:167543916754391676353915Escherichia coli str. K-12 substr. DH10B, complete genomepredicted fimbrial-like adhesin protein7e-70264
NC_009800:1589000:160364316036431604557915Escherichia coli HS, complete genomeprotein FimH homolog7e-70264
NC_016902:2395578:240919424091942410108915Escherichia coli KO11FL chromosome, complete genomeFimH mannose-binding protein7e-70264
NC_011741:1579375:159378815937881594702915Escherichia coli IAI1 chromosome, complete genomeputative fimbrial-like exported adhesin protein7e-70264
CP002185:1681327:169574016957401696654915Escherichia coli W, complete genomepredicted fimbrial-like adhesin protein7e-70264
CU928160:1579375:159378815937881594702915Escherichia coli IAI1 chromosome, complete genomeputative fimbrial-like exported adhesin protein7e-70264
CP002516:2395578:240919424091942410108915Escherichia coli KO11, complete genomeFimH mannose-binding protein7e-70264
NC_007384:1696831:170179017017901702704915Shigella sonnei Ss046, complete genomeputative adhesin7e-70264
NC_010468:2345781:235613223561322357046915Escherichia coli ATCC 8739, complete genomeFimH mannose-binding domain protein7e-70264
NC_000913:1570431:158484415848441585758915Escherichia coli K12, complete genomepredicted fimbrial-like adhesin protein7e-70264
NC_011415:1669484:168389716838971684811915Escherichia coli SE11 chromosome, complete genomeputative fimbrial protein5e-70264
CU928145:1684777:169919016991901700104915Escherichia coli 55989 chromosome, complete genomeputative fimbrial-like exported adhesin protein5e-70264
NC_009801:1678790:169665616966561697570915Escherichia coli E24377A, complete genomeprotein FimH homolog5e-70264
NC_011748:1684777:169919016991901700104915Escherichia coli 55989, complete genomeputative fimbrial-like exported adhesin protein5e-70264
NC_013364:1902761:192062719206271921541915Escherichia coli O111:H- str. 11128, complete genomeputative fimbrial-like adhesin protein7e-70264
NC_013361:2047170:206503220650322065946915Escherichia coli O26:H11 str. 11368 chromosome, complete genomefimbrial-like adhesin protein7e-70264
NC_012967:1546000:156077115607711561685915Escherichia coli B str. REL606 chromosome, complete genomeputative fimbrial-like adhesin protein7e-70264
NC_012947:2228235:223916822391682240082915Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeFimH mannose-binding domain protein7e-70264
NC_012759:1462490:147690314769031477817915Escherichia coli BW2952 chromosome, complete genomeputative fimbrial-like adhesin protein7e-70264
NC_013353:1711656:172952417295241730438915Escherichia coli O103:H2 str. 12009, complete genomefimbrial-like adhesin protein8e-70263
AP010958:1711656:172952417295241730438915Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted fimbrial-like adhesin protein8e-70263
NC_010498:1659328:166439916643991665313915Escherichia coli SMS-3-5, complete genomeprotein FimH-like protein2e-69262
NC_011751:1770376:178478917847891785703915Escherichia coli UMN026 chromosome, complete genomeputative fimbrial-like exported adhesin protein2e-69262
NC_011750:1849561:186398118639811864895915Escherichia coli IAI39 chromosome, complete genomeputative fimbrial-like exported adhesin protein4e-69261
NC_007946:1632025:164644316464431647357915Escherichia coli UTI89, complete genomeputative Fml fimbrial adhesin FmlD precursor4e-69261
NC_008563:1620943:163536116353611636275915Escherichia coli APEC O1, complete genomeputative Fml fimbrial adhesin FmlD precursor4e-69261
NC_011601:1675000:168947116894711690385915Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomefimbrial protein-like protein5e-69261
NC_004431:1754627:177249817724981773412915Escherichia coli CFT073, complete genomeHypothetical fimbrial-like protein ydeQ precursor7e-69260
CP002797:1591000:159734315973431598257915Escherichia coli NA114, complete genomeFimbrial-like protein2e-68258
NC_007606:1515403:151919515191951519872678Shigella dysenteriae Sd197, complete genomeputative adhesin7e-51201
NC_004431:1166568:1193817119381711948271011Escherichia coli CFT073, complete genomeF1C Putative fimbrial adhesin precursor2e-39162
NC_008253:296500:316986316986317885900Escherichia coli 536, complete genomeF1C putative fimbrial adhesin precursor5e-39161
NC_011742:1574036:158845415884541588909456Escherichia coli S88 chromosome, complete genome3e-37155
NC_015567:1206727:122183612218361222792957Serratia sp. AS9 chromosome, complete genomeFimH mannose-binding protein3e-21102
NC_015566:1206500:122165112216511222607957Serratia sp. AS12 chromosome, complete genomeFimH mannose-binding protein3e-21102
NC_010658:1593137:160835916083591608538180Shigella boydii CDC 3083-94, complete genomeprotein FimH3e-1169.3