Pre_GI: BLASTP Hits

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Query: NC_008258:3224721:3239211 Shigella flexneri 5 str. 8401, complete genome

Start: 3239211, End: 3239756, Length: 546

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004741:3240909:325539932553993256169771Shigella flexneri 2a str. 2457T, complete genome1e-101368
CU928160:3344746:335902933590293359799771Escherichia coli IAI1 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase2e-101367
NC_009801:3595001:360766436076643608434771Escherichia coli E24377A, complete genome2-dehydro-3-deoxyglucarate aldolase2e-101367
CP002516:613462:614812614812615582771Escherichia coli KO11, complete genome2-dehydro-3-deoxyglucarate aldolase2e-101367
CP002185:3475991:349049134904913491261771Escherichia coli W, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase2e-101367
NC_002695:3994970:401202240120224012792771Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-101367
CU928145:3608917:362775536277553628525771Escherichia coli 55989 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase2e-101367
NC_010498:3488513:350262335026233503393771Escherichia coli SMS-3-5, complete genome2-dehydro-3-deoxyglucarate aldolase2e-101367
NC_011750:3768692:378563137856313786401771Escherichia coli IAI39 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase2e-101367
NC_011751:3710786:372772737277273728497771Escherichia coli UMN026 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase2e-101367
NC_016902:613462:614812614812615582771Escherichia coli KO11FL chromosome, complete genome2-dehydro-3-deoxyglucarate aldolase2e-101367
NC_013941:3884725:390166439016643902434771Escherichia coli O55:H7 str. CB9615 chromosome, complete genome2-dehydro-3-deoxyglucarate aldolase2e-101367
NC_011741:3344746:335902933590293359799771Escherichia coli IAI1 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase2e-101367
NC_011415:3523364:354059135405913541361771Escherichia coli SE11 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase2e-101367
NC_007613:2981829:299541529954152996185771Shigella boydii Sb227, complete genomehypothetical protein2e-101367
NC_011748:3608917:362775536277553628525771Escherichia coli 55989, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase2e-101367
NC_000913:3256307:327080932708093271579771Escherichia coli K12, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase1e-100365
AC_000091:3258377:327264232726423273412771Escherichia coli W3110 DNA, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase1e-100365
NC_010473:3354052:336855433685543369324771Escherichia coli str. K-12 substr. DH10B, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase1e-100365
NC_009800:3307123:332140733214073322177771Escherichia coli HS, complete genome2-dehydro-3-deoxyglucarate aldolase1e-100365
NC_012759:3143455:315795731579573158727771Escherichia coli BW2952 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase1e-100365
NC_012947:630757:634053634053634823771Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completealpha-dehydro-beta-deoxy-D-glucarate aldolase1e-100365
NC_012967:3191319:320571632057163206486771Escherichia coli B str. REL606 chromosome, complete genomealpha-dehydro-beta-deoxy-D-glucarate aldolase1e-100365
NC_010468:613812:617108617108617878771Escherichia coli ATCC 8739, complete genome2-dehydro-3-deoxyglucarate aldolase3e-100363
NC_008786:1298817:132224413222441323041798Verminephrobacter eiseniae EF01-2, complete genome2-dehydro-3-deoxyglucarate aldolase1e-48192
NC_011892:352652:374207374207374974768Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase9e-42169
NC_010002:4287439:430593743059374306818882Delftia acidovorans SPH-1, complete genome2-dehydro-3-deoxyglucarate aldolase5e-40163
NC_015563:3266004:326774632677463268585840Delftia sp. Cs1-4 chromosome, complete genome4-hydroxy-2-oxovalerate aldolase5e-40163
NC_010645:1341475:135519913551991356017819Bordetella avium 197N, complete genome2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase1e-39162
NC_015563:313283:334116334116334925810Delftia sp. Cs1-4 chromosome, complete genome4-hydroxy-2-oxovalerate aldolase3e-39160
NC_014718:102852:103772103772104575804Burkholderia rhizoxinica HKI 454 chromosome, complete genome2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase2e-38157
NC_003911:3864852:389505038950503895820771Silicibacter pomeroyi DSS-3, complete genomeHpcH/HpaI aldolase family protein6e-35146
NC_009256:3540531:354263035426303543415786Burkholderia vietnamiensis G4 chromosome 1, complete sequence2-dehydro-3-deoxyglucarate aldolase6e-34143
NC_015556:1188500:119306511930651193865801Pseudomonas fulva 12-X chromosome, complete genome2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase4e-33140
NC_009952:1680682:171106417110641711846783Dinoroseobacter shibae DFL 12, complete genome2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase2e-31135
NC_008698:1556223:157032515703251571086762Thermofilum pendens Hrk 5, complete genome2-dehydro-3-deoxyglucarate aldolase5e-27120
NC_007908:1328832:133667113366711337450780Rhodoferax ferrireducens T118, complete genome2-dehydro-3-deoxyglucarate aldolase5e-25113
NC_010627:127968:138649138649139440792Burkholderia phymatum STM815 plasmid pBPHY02, complete sequenceHpcH/HpaI aldolase6e-25113
NC_021150:3303959:331743033174303317780351Azotobacter vinelandii CA6, complete genome5e-24110
NC_012560:3303961:331743233174323317782351Azotobacter vinelandii DJ, complete genome5e-24110
NC_007955:1664998:167532216753221676089768Methanococcoides burtonii DSM 6242, complete genome2-dehydro-3-deoxyglucarate aldolase1e-23109
NC_013526:316075:323720323720324538819Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genome2-dehydro-3-deoxyglucarate aldolase9e-23106
NC_020304:2677372:271256027125602713348789Desulfocapsa sulfexigens DSM 10523, complete genome2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase1e-21102
NC_018644:602200:615587615587616408822Alpha proteobacterium HIMB59 chromosome, complete genomeHpaI aldolase/citrate lyase family protein5e-21100
NC_011985:61003:100401100401101207807Agrobacterium radiobacter K84 chromosome 1, complete genomehydroxyacid aldolase protein1e-2099.4
NC_018645:2492779:250729925072992508051753Desulfobacula toluolica Tol2, complete genome2-dehydro-3-deoxyglucarate aldolase3e-2097.8
NC_010803:2067539:208701520870152087779765Chlorobium limicola DSM 245, complete genomeHpcH/HpaI aldolase3e-1994.4
NC_015581:1043394:106438310643831065147765Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomeHpcH/HpaI aldolase4e-1890.9
NC_004547:1600900:161793016179301618712783Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase3e-1684.7
NC_010625:1465603:147072314707231471520798Burkholderia phymatum STM815 plasmid pBPHY01, complete sequenceHpcH/HpaI aldolase4e-1684.3
NC_009921:3666898:369061736906173691381765Frankia sp. EAN1pec, complete genomeHpcH/HpaI aldolase2e-1581.6
NC_016641:4151403:417369041736904174451762Paenibacillus terrae HPL-003 chromosome, complete genomeHpcH/HpaI aldolase3e-1581.6
NC_016048:3667890:367537436753743676144771Oscillibacter valericigenes Sjm18-20, complete genomealdolase3e-1581.3
NC_015497:2831148:283705128370512837797747Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeHpcH/HpaI aldolase3e-1581.3
NC_007953:504939:521676521676522437762Burkholderia xenovorans LB400 chromosome 3, complete sequencePutative HpcH/HpaI aldolase4e-1374.3
NC_008726:6393489:642495564249556425761807Mycobacterium vanbaalenii PYR-1, complete genomeHpcH/HpaI aldolase6e-1373.9
NC_009050:427000:450373450373451173801Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceHpcH/HpaI aldolase1e-1272.8
NC_008596:3404832:342253234225323423314783Mycobacterium smegmatis str. MC2 155, complete genomeputative hydroxyacid aldolase4e-1270.9
NC_011894:7035285:704181070418107042589780Methylobacterium nodulans ORS 2060, complete genomeHpcH/HpaI aldolase3e-1168.2
NC_007494:739403:767008767008767808801Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequenceputative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase5e-1167
NC_013131:4422000:444430144443014445152852Catenulispora acidiphila DSM 44928, complete genomeHpcH/HpaI aldolase3e-0961.2