Pre_GI: BLASTP Hits

Some Help

Query: NC_008258:3224721:3237049 Shigella flexneri 5 str. 8401, complete genome

Start: 3237049, End: 3238275, Length: 1227

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3289853:3302181330218133034071227Shigella flexneri 2002017 chromosome, complete genomeglycerate kinase0780
NC_004337:3249791:3262119326211932633451227Shigella flexneri 2a str. 301, complete genomehypothetical protein0780
NC_004741:3240909:3253237325323732544631227Shigella flexneri 2a str. 2457T, complete genomehypothetical protein0780
CU928145:3608917:3625593362559336268191227Escherichia coli 55989 chromosome, complete genomeglycerate kinase I0778
CU928160:3344746:3356867335686733580931227Escherichia coli IAI1 chromosome, complete genomeglycerate kinase I0778
NC_011748:3608917:3625593362559336268191227Escherichia coli 55989, complete genomeglycerate kinase I0778
NC_011741:3344746:3356867335686733580931227Escherichia coli IAI1 chromosome, complete genomeglycerate kinase I0778
NC_016902:613462:6165186165186177441227Escherichia coli KO11FL chromosome, complete genomeglycerate kinase0776
CP002516:613462:6165186165186177441227Escherichia coli KO11, complete genomeglycerate kinase0776
NC_013941:3884725:3899502389950239007281227Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein0776
NC_010473:3354052:3366392336639233676181227Escherichia coli str. K-12 substr. DH10B, complete genomeglycerate kinase I0774
NC_000913:3256307:3268647326864732698731227Escherichia coli K12, complete genomeglycerate kinase I0774
AC_000091:3258377:3270480327048032717061227Escherichia coli W3110 DNA, complete genomeglycerate kinase I0774
NC_012967:3191319:3203554320355432047801227Escherichia coli B str. REL606 chromosome, complete genomeglycerate kinase I0774
NC_007613:2981829:2993253299325329944791227Shigella boydii Sb227, complete genomehypothetical protein0773
NC_011751:3710786:3725565372556537267911227Escherichia coli UMN026 chromosome, complete genomeglycerate kinase I0771
NC_011750:3768692:3783469378346937846951227Escherichia coli IAI39 chromosome, complete genomeglycerate kinase I0769
NC_009801:3595001:3605502360550236066471146Escherichia coli E24377A, complete genomeglycerate kinase0719
NC_011415:3523364:3538429353842935395741146Escherichia coli SE11 chromosome, complete genomeglycerate kinase I0719
CP002185:3475991:3488329348832934894741146Escherichia coli W, complete genomeglycerate kinase I0718
NC_002695:3994970:4009860400986040110051146Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein0717
NC_009800:3307123:3319245331924533203901146Escherichia coli HS, complete genomeglycerate kinase0716
NC_010468:613812:6188956188956200401146Escherichia coli ATCC 8739, complete genomeGlycerate kinase0716
NC_012759:3143455:3155795315579531569401146Escherichia coli BW2952 chromosome, complete genomeglycerate kinase0716
NC_012947:630757:6358406358406369851146Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeglycerate kinase I0716
NC_010498:3488513:3500461350046135016061146Escherichia coli SMS-3-5, complete genomeglycerate kinase0712
NC_010658:3014371:3015352301535230164971146Shigella boydii CDC 3083-94, complete genomeglycerate kinase0710
NC_015565:824448:8359778359778371131137Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeglycerate kinase9e-117420
NC_009328:3504454:3507289350728935084431155Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeglycerate kinase3e-114412
NC_011184:2421687:2424238242423824253681131Vibrio fischeri MJ11 chromosome I, complete sequenceglycerate kinase1e-113409
NC_009848:3582384:3594485359448535956241140Bacillus pumilus SAFR-032, complete genomeglycerate kinase3e-113409
NC_012779:3570720:3585477358547735866131137Edwardsiella ictaluri 93-146, complete genomeglycerate kinase 11e-111403
NC_014166:1008266:1015842101584210169991158Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeglycerate kinase2e-109395
NC_017208:108134:1604791604791616241146Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeglycerate kinase2e-108392
NC_014171:109280:1587161587161598611146Bacillus thuringiensis BMB171 chromosome, complete genomeglycerate kinase5e-107388
NC_006351:142788:1628161628161639821167Burkholderia pseudomallei K96243 chromosome 2, complete sequenceglycerate kinase 15e-105381
NC_007435:1981164:2001363200136320025291167Burkholderia pseudomallei 1710b chromosome II, complete sequenceglycerate kinase 17e-104377
NC_009078:142794:1628341628341640001167Burkholderia pseudomallei 1106a chromosome II, complete sequenceglycerate kinase2e-103376
NC_009901:3317068:3317068331706833182221155Shewanella pealeana ATCC 700345, complete genomeGlycerate kinase5e-101368
NC_010623:1961685:2010979201097920121661188Burkholderia phymatum STM815 chromosome 2, complete sequenceGlycerate kinase3e-100365
NC_010674:2435241:2445353244535324464831131Clostridium botulinum B str. Eklund 17B, complete genomeglycerate kinase 26e-99361
NC_010723:2231834:2243330224333022444661137Clostridium botulinum E3 str. Alaska E43, complete genomeglycerate kinase2e-98359
NC_015499:352934:3704113704113715831173Thermodesulfobium narugense DSM 14796 chromosome, complete genomeglycerate kinase2e-95349
NC_014410:2609588:2619071261907126202071137Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,glycerate kinase4e-91335
NC_008054:899441:9007509007509018981149Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeGlycerate kinase2e-90333
NC_008529:887008:8882908882908894381149Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeGlycerate kinase2e-90333
NC_015555:2359000:2366604236660423677221119Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeglycerate kinase8e-90330
NC_020207:1346579:1376788137678813779331146Enterococcus faecium NRRL B-2354, complete genomeGlycerate kinase1e-88327
NC_007492:3332839:3353040335304033541791140Pseudomonas fluorescens PfO-1, complete genomeGlycerate kinase3e-88325
NC_007503:1111457:1129126112912611302801155Carboxydothermus hydrogenoformans Z-2901, complete genomeglycerate kinase 22e-87322
NC_010498:4967724:4972272497227249734141143Escherichia coli SMS-3-5, complete genomeglycerate kinase GcxK2e-83309
NC_014654:592582:5978905978905990381149Halanaerobium sp. 'sapolanicus' chromosome, complete genomeglycerate kinase8e-83307
NC_009615:3756196:3758330375833037594751146Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein1e-78293
NC_011593:1651635:1653470165347016546031134Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,glycerate kinase3e-76285
NC_017219:1651425:1653260165326016544111152Bifidobacterium longum subsp. infantis ATCC 15697, complete genomeglycerate kinase4e-76285
NC_014335:2009662:2029142202914220303261185Bacillus cereus biovar anthracis str. CI chromosome, completeglycerate kinase5e-71268
NC_012472:2109719:2129812212981221309961185Bacillus cereus 03BB102, complete genomeconserved hypothetical protein TIGR000459e-70264
NC_020134:301500:3102103102103113461137Clostridium stercorarium subsp. stercorarium DSM 8532, completeglycerate kinase GlxK7e-70264
NC_015977:2309873:2316561231656123176881128Roseburia hominis A2-183 chromosome, complete genomehypothetical protein2e-69263
NC_015577:862659:8827348827348838761143Treponema azotonutricium ZAS-9 chromosome, complete genomeglycerate kinase3e-68259
NC_021175:597968:5986245986245997541131Streptococcus oligofermentans AS 1.3089, complete genomeglycerate kinase8e-68258
NC_013521:2924540:2926021292602129271781158Sanguibacter keddieii DSM 10542, complete genomeglycerate kinase5e-67255
NC_011992:2279752:2290120229012022913191200Acidovorax ebreus TPSY, complete genomeglycerate kinase5e-66251
NC_014330:697429:7013927013927025311140Brachyspira pilosicoli 95/1000 chromosome, complete genomeglycerate kinase7e-65248
NC_019908:2496149:2516075251607525172141140Brachyspira pilosicoli P43/6/78 chromosome, complete genomeglycerate kinase1e-64247
NC_003888:2305901:2305901230590123071991299Streptomyces coelicolor A3(2), complete genomeglycerate kinase4e-63242
NC_004369:256262:2589672589672601871221Corynebacterium efficiens YS-314, complete genomeputative glycerate kinase3e-58226
NC_015145:92397:1110341110341122031170Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeglycerate kinase1e-57224
NC_015581:1791658:1813058181305818141911134Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomeglycerate kinase4e-57222
NC_010545:2025000:2026553202655320277911239Corynebacterium urealyticum DSM 7109, complete genomeputative glycerate kinase9e-57221
NC_008618:1487000:1487043148704314882451203Bifidobacterium adolescentis ATCC 15703, complete genomeglycerate kinase6e-56218
NC_015859:1099919:1130131113013111312311101Corynebacterium variabile DSM 44702 chromosome, complete genomeglycerate kinase1e-54214
NC_015656:1653450:1669849166984916710661218Frankia symbiont of Datisca glomerata chromosome, complete genomeglycerate kinase1e-52207
NC_015690:1818333:1848417184841718495741158Paenibacillus mucilaginosus KNP414 chromosome, complete genomeglycerate kinase2e-52206
NC_016935:2347691:2378291237829123794481158Paenibacillus mucilaginosus 3016 chromosome, complete genomeglycerate kinase2e-52206
NC_013093:5734002:5740013574001357411461134Actinosynnema mirum DSM 43827, complete genomeglycerate kinase3e-47189
NC_015514:2414617:2433546243354624347361191Cellulomonas fimi ATCC 484 chromosome, complete genomeglycerate kinase3e-44179
NC_016884:256598:2565982565982577161119Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeglycerate kinase2e-38160
NC_015757:263938:2639382639382650561119Sulfobacillus acidophilus TPY chromosome, complete genomeglycerate kinase 22e-38160
NC_011000:1262324:1290608129060812917651158Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative glycerate kinase4e-38159
NC_006361:2920028:2921917292191729230531137Nocardia farcinica IFM 10152, complete genomehypothetical protein2e-36153
NC_019673:1656680:1666964166696416679861023Saccharothrix espanaensis DSM 44229 complete genomeGlycerate kinase5e-35149
NC_017080:2379551:2381193238119323823201128Phycisphaera mikurensis NBRC 102666, complete genomeglycerate kinase6e-34145
NC_015671:1540860:1544780154478015459581179Cellvibrio gilvus ATCC 13127 chromosome, complete genomeglycerate kinase3e-33143
NC_020302:146807:1629551629551639741020Corynebacterium halotolerans YIM 70093 = DSM 44683, completeglycerate kinase5e-29129
NC_014334:369974:3862103862103873551146Lactobacillus casei str. Zhang chromosome, complete genomeglycerate kinase5e-28125
NC_017303:1454841:1473388147338814745781191Corynebacterium pseudotuberculosis I19 chromosome, complete genomeglycerate kinase1e-27124
NC_017317:1598925:1615662161566216168611200Corynebacterium ulcerans 809 chromosome, complete genomehypothetical protein1e-25117
NC_014151:2312000:2328173232817323293691197Cellulomonas flavigena DSM 20109 chromosome, complete genomeglycerate kinase3e-24113
NC_015723:589727:589727589727590386660Cupriavidus necator N-1 chromosome 2, complete sequenceglycerate kinase2e-1170.9