Pre_GI: BLASTP Hits

Some Help

Query: NC_008258:269806:293814 Shigella flexneri 5 str. 8401, complete genome

Start: 293814, End: 294536, Length: 723

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011601:1039500:105684210568421057564723Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeDNA-binding protein7e-137486
NC_017328:303987:322722322722323444723Shigella flexneri 2002017 chromosome, complete genomeDNA-binding protein Roi3e-129460
NC_013361:1558423:157703215770321577754723Escherichia coli O26:H11 str. 11368 chromosome, complete genomeDNA-binding protein8e-112402
NC_002655:1332961:134955513495551350283729Escherichia coli O157:H7 EDL933, complete genomeputative DNA-binding protein Roi of bacteriophage BP-933W2e-110398
NC_013364:1183000:120081812008181201540723Escherichia coli O111:H- str. 11128, complete genomeputative DNA-binding protein2e-110398
NC_013364:3312379:333186433318643332343480Escherichia coli O111:H- str. 11128, complete genome2e-80298
NC_009783:1956000:196037119603711961039669Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein2e-36152
NC_013282:1804909:182067518206751821400726Cronobacter turicensis, complete genomehypothetical protein2e-34145
NC_009778:959982:982338982338983075738Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-34145
NC_005966:2110549:212319821231982123923726Acinetobacter sp. ADP1, complete genomeputative DNA-binding protein (Roi)4e-31134
NC_015566:3659318:366059336605933661267675Serratia sp. AS12 chromosome, complete genomePhage regulatory protein, Rha-like protein3e-30132
NC_017047:1906000:191134119113411912000660Rahnella aquatilis HX2 chromosome, complete genomephage antirepressor protein5e-29127
NC_016845:2274500:228340522834052284115711Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,DNA-binding protein Roi2e-27122
NC_011415:2153243:215947421594742160181708Escherichia coli SE11 chromosome, complete genomehypothetical protein5e-27121
NC_013199:845000:847885847885848589705Lactobacillus rhamnosus Lc 705, complete genomephage protein, antirepressor protein3e-25115
NC_011770:860944:874209874209874973765Pseudomonas aeruginosa LESB58, complete genomeputative phage-related protein9e-24110
NC_011770:1431740:144695214469521447656705Pseudomonas aeruginosa LESB58, complete genomehypothetical protein2e-1995.9
NC_004129:4368356:4377096437709643781151020Pseudomonas fluorescens Pf-5, complete genomehypothetical protein4e-1995.1
NC_009513:870837:873859873859874632774Lactobacillus reuteri F275, complete genomeprophage antirepressor8e-1994
NC_010609:880196:883218883218883991774Lactobacillus reuteri JCM 1112, complete genomephage antirepressor8e-1994
NC_009513:1184000:119712311971231197926804Lactobacillus reuteri F275, complete genomephage antirepressor protein1e-1893.2
NC_003212:57061:810818108181854774Listeria innocua Clip11262, complete genomehypothetical protein2e-1892.4
NC_007929:293709:297109297109297837729Lactobacillus salivarius subsp. salivarius UCC118, complete genomePhage antirepressor protein7e-1890.9
NC_013174:2321000:232849123284912329225735Jonesia denitrificans DSM 20603, complete genomephage antirepressor protein9e-1890.5
NC_000964:2146000:219877621987762199531756Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein3e-1788.6
NC_009778:2993218:300358730035873004291705Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-1788.6
NC_003212:2413824:243981624398162440586771Listeria innocua Clip11262, complete genomehypothetical protein1e-1687
NC_014011:1139818:115821711582171158990774Aminobacterium colombiense DSM 12261 chromosome, complete genomeprophage antirepressor1e-1686.7
NC_016799:167362:181688181688182506819Corynebacterium diphtheriae 31A chromosome, complete genomeputative anti-repressor protein2e-1685.9
NC_016816:2953530:296618529661852966979795Pantoea ananatis LMG 5342, complete genomeputative bacteriophage antirepressor5e-1684.7
NC_013282:1200993:122664412266441227345702Cronobacter turicensis, complete genomehypothetical protein8e-1684
NC_014925:578759:586200586200586955756Staphylococcus pseudintermedius HKU10-03 chromosome, completePhage antirepressor protein1e-1583.2
NC_015052:1030708:104657610465761047355780Bifidobacterium longum subsp. infantis 157F, complete genomephage antirepressor2e-1582.8
NC_017219:1680344:168201016820101682789780Bifidobacterium longum subsp. infantis ATCC 15697, complete genomeputative phage antirepressor2e-1582.8
NC_011593:1680215:168222016822201682999780Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,phage antirepressor protein2e-1582.8
NC_017353:887581:893259893259894014756Staphylococcus lugdunensis N920143, complete genomeputative anti repressor7e-1580.9
NC_008021:779380:782542782542783291750Streptococcus pyogenes MGAS9429, complete genomephage antirepressor protein2e-1479.3
NC_004606:623853:628626628626629354729Streptococcus pyogenes SSI-1, complete genomeputative P1-type antirepressor (phage associated)3e-1479
NC_014393:4323368:434092443409244341685762Clostridium cellulovorans 743B chromosome, complete genomeprophage antirepressor3e-1479
NC_020272:2748733:279414927941492794877729Bacillus amyloliquefaciens IT-45, complete genomeProtein kilA4e-1478.6
NC_017338:2034698:207441120744112075163753Staphylococcus aureus subsp. aureus JKD6159 chromosome, completephage antirepressor protein5e-1478.2
NC_009487:362475:365544365544366296753Staphylococcus aureus subsp. aureus JH9 chromosome, completephage antirepressor protein7e-1477.8
NC_009632:361229:365614365614366366753Staphylococcus aureus subsp. aureus JH1 chromosome, completephage antirepressor protein7e-1477.8
NC_013450:854790:859860859860860612753Staphylococcus aureus subsp. aureus ED98, complete genomephage anti repressor7e-1477.8
NC_015558:1389369:140798014079801408705726Streptococcus parauberis KCTC 11537 chromosome, complete genomeputative P1-type antirepressor - phage associated6e-1477.8
NC_002758:2101137:212058321205832121338756Staphylococcus aureus subsp. aureus Mu50, complete genomeanti repressor6e-1477.8
NC_017337:321155:325741325741326493753Staphylococcus aureus subsp. aureus ED133 chromosome, completePhage antirepressor protein6e-1477.8
NC_010079:2102856:212212521221252122877753Staphylococcus aureus subsp. aureus USA300_TCH1516, completepossible bacteriophage antirepressor6e-1477.8
NC_009487:2148316:216523321652332165982750Staphylococcus aureus subsp. aureus JH9 chromosome, completephage antirepressor protein6e-1477.8
NC_009632:2148767:216510721651072165856750Staphylococcus aureus subsp. aureus JH1 chromosome, completephage antirepressor protein6e-1477.8
NC_014328:303063:355534355534356307774Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative prophage antirepressor5e-1477.8
NC_007622:1842000:188155718815571882306750Staphylococcus aureus RF122, complete genomephage anti-repressor protein5e-1477.8
NC_017188:1172181:124543412454341246141708Bacillus amyloliquefaciens TA208 chromosome, complete genomeDNA-binding protein anti-repressor; phage SPbeta8e-1477.4
NC_017191:1173989:124701112470111247718708Bacillus amyloliquefaciens XH7 chromosome, complete genomeDNA-binding protein anti-repressor8e-1477.4
NC_017190:2130651:221174522117452212497753Bacillus amyloliquefaciens LL3 chromosome, complete genomeSPBc2 prophage-derived antirepressor protein yoqD7e-1477.4
NC_002737:780857:783634783634784362729Streptococcus pyogenes M1 GAS, complete genomeputative P1-type antirepressor - phage associated9e-1477
NC_015558:1425271:144646214464621447229768Streptococcus parauberis KCTC 11537 chromosome, complete genomephage antirepressor protein2e-1376.3
NC_003485:579946:582257582257583018762Streptococcus pyogenes MGAS8232, complete genomeputative antirepressor2e-1376.3
NC_009332:1269000:130504913050491305810762Streptococcus pyogenes str. Manfredo chromosome, complete genomephage antirepressor protein2e-1376.3
NC_012563:2597934:260796126079612608749789Clostridium botulinum A2 str. Kyoto, complete genomephage antirepressor protein2e-1375.9
NC_014551:576000:578839578839579609771Bacillus amyloliquefaciens DSM 7, complete genomephage antirepressor [Staphylococcus prophage phiPV83]3e-1375.9
NC_009053:553298:568967568967569662696Actinobacillus pleuropneumoniae L20, complete genomehypothetical protein6e-1374.3
NC_010655:1606901:163592716359271636721795Akkermansia muciniphila ATCC BAA-835, complete genomeprophage antirepressor2e-1272.8
NC_014136:329484:367054367054367797744Leuconostoc kimchii IMSNU11154 chromosome, complete genomehypothetical protein3e-1272.4
NC_009706:1972000:198827419882741989077804Clostridium kluyveri DSM 555 chromosome, complete genomeprophage antirepressor3e-1272.4
NC_019842:1172944:117692511769251177584660Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,Protein kilA1e-1067
NC_010501:3987615:399498839949883995743756Pseudomonas putida W619, complete genomephage antirepressor protein2e-1065.9
NC_014738:2094000:212450121245012125250750Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,phage antirepressor protein3e-1065.5
NC_017045:119046:129750129750130499750Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,phage antirepressor protein3e-1065.5
NC_009937:958576:972170972170972916747Azorhizobium caulinodans ORS 571, complete genomeputative antirepressor protein4e-0961.6
NC_003210:2380419:239645423964542397230777Listeria monocytogenes EGD-e, complete genomehypothetical protein6e-0961.2
NC_011660:2924397:292850229285022929290789Listeria monocytogenes HCC23 chromosome, complete genomephage anti-repressor2e-0859.7
NC_011001:2085986:209670520967052097502798Burkholderia cenocepacia J2315 chromosome 2, complete sequencehypothetical protein4e-0858.5
NC_006582:2944237:298451629845162985238723Bacillus clausii KSM-K16, complete genomephage anti-repressor protein5e-0858.2
NC_014632:1112733:112580811258081126494687Ilyobacter polytropus DSM 2926 chromosome, complete genomephage regulatory protein, Rha family1e-0757
NC_010468:1343228:134738713473871347989603Escherichia coli ATCC 8739, complete genomehypothetical protein4e-0755.5
NC_007712:1516589:152579515257951526622828Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein2e-0653.1