Pre_GI: BLASTP Hits

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Query: NC_008258:269806:287337 Shigella flexneri 5 str. 8401, complete genome

Start: 287337, End: 287969, Length: 633

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011283:4212000:422109942210994221815717Klebsiella pneumoniae 342 chromosome, complete genomephage repressor protein1e-57222
NC_007946:2625461:262998526299852630635651Escherichia coli UTI89, complete genomerepressor protein1e-53209
NC_009800:289000:301440301440302090651Escherichia coli HS, complete genomeP22 repressor protein c21e-53209
NC_012947:3015985:302163430216343022284651Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeXRE family transcriptional regulator1e-53209
NC_013361:3112023:312984531298453130495651Escherichia coli O26:H11 str. 11368 chromosome, complete genomephage repressor protein CI1e-53209
NC_013941:3300000:330265133026513303301651Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeP22 repressor protein c21e-53209
NC_014306:3524980:356790335679033568601699Erwinia billingiae Eb661, complete genomeRepressor protein cI3e-53208
NC_011083:374000:385883385883386533651Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,P22 repressor protein c21e-52206
NC_015663:4767443:478544147854414786193753Enterobacter aerogenes KCTC 2190 chromosome, complete genomeP22 repressor protein c23e-47187
NC_009783:1956000:195674419567441957409666Vibrio harveyi ATCC BAA-1116 chromosome I, complete sequencehypothetical protein7e-45180
NC_015379:4691868:469213346921334692831699Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative phage regulatory protein1e-44179
NC_013850:1887556:189996518999651900627663Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, XRE family3e-44177
NC_010554:2646806:265134526513452651992648Proteus mirabilis HI4320, complete genomephage repressor5e-43174
NC_009778:2993218:301640330164033017065663Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein8e-43173
NC_012660:3116500:312771631277163128423708Pseudomonas fluorescens SBW25 chromosome, complete genomee14 prophage; putative phage repressor3e-41168
NC_011415:2153243:216098621609862161642657Escherichia coli SE11 chromosome, complete genomeputative phage repressor2e-35149
NC_012731:2083650:209731020973102098035726Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeputative repressor protein of prophage4e-31134
NC_004431:3040953:305923330592333059859627Escherichia coli CFT073, complete genomePutative repressor protein of prophage5e-30130
NC_013941:3182576:319016231901623190836675Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein1e-29129
NC_020418:3133831:313802131380213138731711Morganella morganii subsp. morganii KT, complete genomerepressor protein CI2e-27122
NC_017047:1906000:190737719073771908024648Rahnella aquatilis HX2 chromosome, complete genomeputative repressor protein of prophage8e-27120
NC_020418:2910593:291496229149622915621660Morganella morganii subsp. morganii KT, complete genomeSOS-response transcriptional repressors (RecA-mediated autopeptidases)1e-26119
NC_007712:2028500:206857220685722069294723Sodalis glossinidius str. 'morsitans', complete genomephage repressor4e-24111
NC_021066:2226826:224423422442342244866633Raoultella ornithinolytica B6, complete genomehypothetical protein6e-24110
NC_011353:305820:305820305820306533714Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeprophage repressor7e-24110
NC_002655:301940:301940301940302653714Escherichia coli O157:H7 EDL933, complete genomeputative cI repressor protein for prophage CP-933H7e-24110
NC_002695:301939:301939301939302652714Escherichia coli O157:H7 str. Sakai, complete genomecI7e-24110
NC_012759:4132527:414282841428284143541714Escherichia coli BW2952 chromosome, complete genomeRepressor protein CI8e-23107
NC_011601:2614691:261961826196182620331714Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomerepressor protein6e-23107
NC_017328:303987:317642317642318337696Shigella flexneri 2002017 chromosome, complete genomeCI protein9e-23106
NC_013364:2645438:265235726523572652980624Escherichia coli O111:H- str. 11128, complete genomeputative phage repressor protein CI3e-22105
NC_007946:1239278:125028212502821250935654Escherichia coli UTI89, complete genomeputative CI repressor of bacteriophage3e-22105
NC_011601:1039500:105177110517711052424654Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomerepressor protein3e-22105
NC_013941:975353:989229989229989882654Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeCI protein3e-22105
NC_009348:1663870:166905016690501669733684Aeromonas salmonicida subsp. salmonicida A449, complete genomephage repressor3e-22105
NC_004578:3849835:385799038579903858721732Pseudomonas syringae pv. tomato str. DC3000, complete genomerepressor protein c22e-22105
NC_009708:2537557:255467625546762555386711Yersinia pseudotuberculosis IP 31758 chromosome, complete genomerepressor protein C24e-22104
NC_008563:1175035:118767011876701188365696Escherichia coli APEC O1, complete genomeputative CI repressor of bacteriophage3e-22104
NC_011742:1177946:119125811912581191959702Escherichia coli S88 chromosome, complete genomeRepressor protein CI from phage origin3e-22104
NC_015968:3301958:331235333123533313006654Enterobacter asburiae LF7a chromosome, complete genomephage repressor like XRE family transcriptional regulator6e-22103
NC_002947:3404000:341945034194503420181732Pseudomonas putida KT2440, complete genomepyocin R2_PP, transcriptional repressor, CI/C2 family6e-22103
NC_017986:5509569:552387155238715524602732Pseudomonas putida ND6 chromosome, complete genometranscriptional repressor pyocin R2 PP1e-21102
NC_014837:2354241:235780423578042358529726Pantoea sp. At-9b chromosome, complete genomeXRE family transcriptional regulator1e-2099.8
NC_012779:2184927:220196422019642202635672Edwardsiella ictaluri 93-146, complete genomerepressor protein CI7e-2097.4
NC_007645:605500:605820605820606407588Hahella chejuensis KCTC 2396, complete genomeSOS-response transcriptional repressors (RecA-mediated autopeptidase)5e-2097.4
NC_004578:4499143:452278245227824523486705Pseudomonas syringae pv. tomato str. DC3000, complete genomerepressor protein cI3e-1995.1
NC_004431:1401681:141242714124271412849423Escherichia coli CFT073, complete genomeRepressor protein1e-1893.2
NC_010002:2110953:212346721234672124114648Delftia acidovorans SPH-1, complete genomepeptidase S24 and S26 domain protein2e-1789.4
NC_014910:1708045:172518017251801725950771Alicycliphilus denitrificans BC chromosome, complete genomepeptidase s24/s26a/s26b, conserved region protein2e-1789
NC_017986:4091051:410215841021584102514357Pseudomonas putida ND6 chromosome, complete genomerepressor protein CI4e-1684.7
NC_011750:5045927:505908250590825059756675Escherichia coli IAI39 chromosome, complete genomerepressor protein phage e14; e14 prophage8e-1580.5
AC_000091:1191353:120383612038361204510675Escherichia coli W3110 DNA, complete genomerepressor protein phage e141e-1480.1
NC_007946:2931364:293500329350032935677675Escherichia coli UTI89, complete genomeputative phage repressor1e-1480.1
NC_008563:2946391:295003029500302950704675Escherichia coli APEC O1, complete genomeputative phage repressor1e-1480.1
NC_000913:1188999:120148212014821202156675Escherichia coli K12, complete genomee14 prophage; repressor protein phage e141e-1480.1
NC_011742:2863316:286734128673412868015675Escherichia coli S88 chromosome, complete genomerepressor protein phage e14; e14 prophage1e-1480.1
NC_009524:1627414:163576016357601636419660Psychrobacter sp. PRwf-1 chromosome, complete genomeputative prophage repressor6e-1477.4
NC_016830:5031819:504224950422495042896648Pseudomonas fluorescens F113 chromosome, complete genomepeptidase s24-like domain protein7e-1477
NC_006905:368942:383603383603383818216Salmonella enterica subsp. enterica serovar Choleraesuis strregulatory protein cro (Antirepressor)2e-1375.9
NC_011094:593100:610406610406610621216Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-1375.9
NC_012125:1330066:134546413454641345679216Salmonella enterica subsp. enterica serovar Paratyphi C strainregulatory protein cro (Antirepressor)2e-1375.9
NC_004129:2201780:221380922138092214522714Pseudomonas fluorescens Pf-5, complete genomepeptidase S24-like domain3e-1271.6
NC_016809:389561:394152394152394811660Haemophilus influenzae 10810, complete genomehypothetical protein8e-1270.5
NC_012791:2832001:285731328573132857981669Variovorax paradoxus S110 chromosome 1, complete genometranscriptional regulator, XRE family2e-1169.3
NC_009778:959982:977343977343978032690Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein6e-1167.4
NC_015389:905165:918044918044918676633Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, XRE family9e-1167
NC_010501:4379920:438793643879364388715780Pseudomonas putida W619, complete genomeputative phage repressor4e-1065.1
NC_009800:320115:326165326165326806642Escherichia coli HS, complete genomehelix-turn-helix/peptidase S24-like domain protein3e-1065.1
NC_021066:2226826:224391422439142244135222Raoultella ornithinolytica B6, complete genomeregulatory protein cro (Antirepressor)5e-1064.3
NC_015424:2726223:275560227556022756036435Aeromonas veronii B565 chromosome, complete genomephage repressor5e-1064.3
NC_011748:824367:827354827354828109756Escherichia coli 55989, complete genomeRegulatory protein CI from bacteriophage origin2e-0962.4
NC_011751:643976:651596651596652351756Escherichia coli UMN026 chromosome, complete genomeregulatory protein CI from bacteriophage origin2e-0962.4
CU928145:824367:827354827354828109756Escherichia coli 55989 chromosome, complete genomeRegulatory protein CI from bacteriophage origin2e-0962.4
NC_006582:2944237:299182829918282992457630Bacillus clausii KSM-K16, complete genomeSOS-response transcriptional repressor4e-0961.2
NC_016809:1778000:177820117782011778866666Haemophilus influenzae 10810, complete genomehypothetical protein6e-0960.8
NC_013799:810636:835033835033835740708Hydrogenobacter thermophilus TK-6, complete genomeputative prophage repressor1e-0860.1
NC_017161:810627:835024835024835959936Hydrogenobacter thermophilus TK-6 chromosome, complete genomeXRE family transcriptional regulator1e-0860.1
NC_004129:2328491:234971423497142350442729Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, Cro/CI family3e-0858.5
NC_002936:253760:263667263667264320654Dehalococcoides ethenogenes 195, complete genometranscriptional repressor LexA, putative8e-0857
NC_002936:797110:810595810595811248654Dehalococcoides ethenogenes 195, complete genometranscriptional repressor LexA, putative8e-0857
NC_009655:1357486:136895013689501369636687Actinobacillus succinogenes 130Z chromosome, complete genomeputative phage repressor1e-0756.6
NC_009567:904922:904922904922905692771Haemophilus influenzae PittGG chromosome, complete genomehypothetical protein2e-0755.8
NC_013446:3034486:304282630428263043365540Comamonas testosteroni CNB-2, complete genomeputative prophage repressor3e-0755.5
NC_007146:1405459:142911714291171430085969Haemophilus influenzae 86-028NP, complete genomehypothetical protein5e-0754.7
NC_014922:825396:848309848309849277969Haemophilus influenzae F3047 chromosome, complete genomehypothetical protein5e-0754.3
NC_015873:1193843:121736912173691217983615Megasphaera elsdenii DSM 20460, complete genomelexA repressor family protein5e-0754.3
NC_015663:4522109:453774545377454538440696Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative phage repressor protein CI2e-0652.4
NC_009665:3869904:389559738955973896322726Shewanella baltica OS185 chromosome, complete genomeputative phage repressor4e-0651.2