Pre_GI: BLASTP Hits

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Query: NC_008258:269806:282892 Shigella flexneri 5 str. 8401, complete genome

Start: 282892, End: 283794, Length: 903

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:303987:314833314833315735903Shigella flexneri 2002017 chromosome, complete genomeputative phage-related DNA recombination protein8e-180629
NC_009800:289000:298005298005298907903Escherichia coli HS, complete genomeRecT family protein5e-178623
NC_013850:1887556:189678918967891897682894Klebsiella variicola At-22 chromosome, complete genomeRecT protein4e-165580
NC_013282:1200993:121037312103731211278906Cronobacter turicensis, complete genomehypothetical protein1e-157555
NC_013353:2911741:291079429107942911744951Escherichia coli O103:H2 str. 12009, complete genomeDNA recombination protein Bet3e-88325
AP010958:2911741:291079429107942911744951Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted DNA recombination protein Bet3e-88325
NC_002927:2338549:234097023409702341956987Bordetella bronchiseptica RB50, complete genomephage-related DNA recombination protein7e-64244
NC_010002:2110953:211638421163842117307924Delftia acidovorans SPH-1, complete genomeRecT protein1e-60233
NC_020063:2565605:258956325895632590489927Enterobacteriaceae bacterium strain FGI 57, complete genomerecombinase, phage RecT family3e-57222
NC_017506:93494:135718135718136674957Marinobacter adhaerens HP15 chromosome, complete genomeRecT protein3e-36152
NC_007712:1954808:1977354197735419783671014Sodalis glossinidius str. 'morsitans', complete genomephage recombinase6e-1685.1
NC_014915:2963500:299691029969102997755846Geobacillus sp. Y412MC52 chromosome, complete genomeRecT protein1e-1584
NC_013411:597235:606180606180607025846Geobacillus sp. Y412MC61, complete genomeRecT protein1e-1584
CP002185:1493280:150252315025231503332810Escherichia coli W, complete genomeRac prophage; recombination and repair protein3e-1479.3
NC_010473:1493983:150140415014041502213810Escherichia coli str. K-12 substr. DH10B, complete genomeRac prophage; recombination and repair protein3e-1479.3
CP002516:2580774:260251826025182603327810Escherichia coli KO11, complete genomeRecT protein3e-1479.3
NC_000913:1404000:141200814120081412817810Escherichia coli K12, complete genomeRac prophage; recombination and repair protein3e-1479.3
AC_000091:1407693:141569814156981416507810Escherichia coli W3110 DNA, complete genomerecombination and repair protein3e-1479.3
NC_011415:1472500:147741214774121478221810Escherichia coli SE11 chromosome, complete genomerecombination and repair protein RecT3e-1479.3
NC_012759:1296000:130406713040671304876810Escherichia coli BW2952 chromosome, complete genomerecombination and repair protein RecT3e-1479.3
NC_012947:2366000:238242123824212383230810Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completerecombination and repair protein RecT3e-1479.3
NC_012967:1403733:141115414111541411963810Escherichia coli B str. REL606 chromosome, complete genomerecombination and repair protein RecT3e-1479.3
NC_016902:2580774:260251826025182603327810Escherichia coli KO11FL chromosome, complete genomeRecT protein3e-1479.3
NC_015437:1494777:151008915100891511000912Selenomonas sputigena ATCC 35185 chromosome, complete genomeRecT protein5e-1478.6
NC_002655:2142587:216290221629022163711810Escherichia coli O157:H7 EDL933, complete genomerecombinase, DNA renaturation protein encoded by prophage CP-933R8e-1477.8
NC_016831:1734292:175921117592111760041831Salmonella enterica subsp. enterica serovar Gallinarum/pullorumphage recombination protein2e-1376.6
NC_010645:406794:4071934071934082241032Bordetella avium 197N, complete genomephage recombination protein3e-1376.3
NC_017208:694500:700832700832701638807Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeDNA-binding phage-related protein3e-1375.9
NC_014831:8965:218752187522801927Thermaerobacter marianensis DSM 12885 chromosome, complete genomeRecT protein4e-1375.5
NC_006270:1415001:143041114304111431232822Bacillus licheniformis ATCC 14580, complete genomeDNA binding, phage related protein7e-1374.7
NC_006322:1415863:143127414312741432095822Bacillus licheniformis ATCC 14580, complete genomeYqaK7e-1374.7
NC_010645:1496816:1498810149881014998411032Bordetella avium 197N, complete genomephage recombination protein1e-1274.3
NC_017351:643674:651432651432652352921Staphylococcus aureus subsp. aureus 11819-97 chromosome, completerecombinase, phage RecT family protein2e-1273.6
NC_017351:2074000:210307321030732103993921Staphylococcus aureus subsp. aureus 11819-97 chromosome, completerecombinase, phage RecT family protein2e-1273.6
NC_017338:2034698:206934620693462070266921Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeputative phage-related DNA recombination protein2e-1273.6
NC_010079:2102856:211736821173682118288921Staphylococcus aureus subsp. aureus USA300_TCH1516, completepossible recombination protein RecT2e-1273.6
NC_002758:2101137:211521621152162116136921Staphylococcus aureus subsp. aureus Mu50, complete genomehypothetical protein2e-1273.6
NC_017341:2127815:214754621475462148466921Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,putative phage-related DNA recombination protein2e-1273.6
NC_011205:1345511:135360813536081354438831Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853recombination and repair protein RecT4e-1272.4
NC_012590:2117027:215253721525372153355819Corynebacterium aurimucosum ATCC 700975, complete genomeputative phage recombinase1e-1170.9
NC_016935:6464201:648503064850306485929900Paenibacillus mucilaginosus 3016 chromosome, complete genomeDNA-binding phage-related protein6e-1168.6
NC_020134:420500:426773426773427588816Clostridium stercorarium subsp. stercorarium DSM 8532, completeprotein RecT1e-1067.4
NC_003485:1228149:123491012349101235839930Streptococcus pyogenes MGAS8232, complete genomeputative recombinase3e-1066.2
NC_012891:1100726:110955111095511110477927Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1,recT protein3e-1066.2
NC_015558:1425271:144215114421511443086936Streptococcus parauberis KCTC 11537 chromosome, complete genomehypothetical protein3e-1065.9
NC_016935:1636278:165086616508661651765900Paenibacillus mucilaginosus 3016 chromosome, complete genomeDNA-binding phage-related protein4e-0962.4
NC_008595:771753:7881987881987893101113Mycobacterium avium 104, complete genomeYqaK protein6e-0962
NC_002662:447236:453010453010453816807Lactococcus lactis subsp. lactis Il1403, complete genomerecombinase2e-0860.5
NC_009256:1253384:1255713125571312567651053Burkholderia vietnamiensis G4 chromosome 1, complete sequenceRecT protein2e-0860.1
NC_009255:1344000:1347310134731013483621053Burkholderia vietnamiensis G4 chromosome 2, complete sequenceRecT protein2e-0860.1
NC_016077:1278104:128970512897051290493789Acidaminococcus intestini RyC-MR95 chromosome, complete genomerecombination and repair protein recT3e-0859.3
NC_012471:141463:148361148361149281921Streptococcus equi subsp. equi 4047, complete genomephage RecT family protein3e-0859.3
NC_014394:993465:9980239980239990751053Gallionella capsiferriformans ES-2 chromosome, complete genomeRecT protein8e-0857.8
NC_016052:842762:848325848325849290966Tetragenococcus halophilus NBRC 12172, complete genomeputative RecT protein1e-0757.8
NC_009487:362475:369884369884370804921Staphylococcus aureus subsp. aureus JH9 chromosome, completeRecT protein1e-0757.4
NC_009632:361229:369954369954370874921Staphylococcus aureus subsp. aureus JH1 chromosome, completeRecT protein1e-0757.4
NC_009487:2148316:216030921603092161229921Staphylococcus aureus subsp. aureus JH9 chromosome, completeRecT protein1e-0757.4
NC_009632:2148767:216018321601832161103921Staphylococcus aureus subsp. aureus JH1 chromosome, completeRecT protein1e-0757.4
NC_015428:1483768:150039815003981501345948Lactobacillus buchneri NRRL B-30929 chromosome, complete genomeRecT protein6e-0755.1
NC_014554:2159782:217425821742582175157900Lactobacillus plantarum subsp. plantarum ST-III chromosome,recombination protein RecT2e-0653.1
NC_021182:2536000:254221125422112543161951Clostridium pasteurianum BC1, complete genomerecombinational DNA repair protein (RecE pathway)4e-0652.4
NC_008571:2582674:259642225964222597363942Gramella forsetii KT0803, complete genomeRecT family protein5e-0652