Pre_GI: BLASTP Hits

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Query: NC_008258:2542863:2543768 Shigella flexneri 5 str. 8401, complete genome

Start: 2543768, End: 2544820, Length: 1053

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010468:1343228:1361194136119413622461053Escherichia coli ATCC 8739, complete genometranscriptional regulator, AraC family0723
NC_017328:2586171:258770325877032588329627Shigella flexneri 2002017 chromosome, complete genomeEthanolamine operon regulatory protein2e-119429
NC_004741:2526421:252820025282002528760561Shigella flexneri 2a str. 2457T, complete genomeputative ARAC-type regulatory protein2e-105382
NC_010805:1642978:1668352166835216693561005Burkholderia multivorans ATCC 17616 chromosome 2, completeAraC family transcriptional regulator1e-41171
NC_008825:2564965:257942525794252580411987Methylibium petroleiphilum PM1, complete genomeputative AraC-family transcriptional regulator5e-36151
NC_008061:2153495:2153495215349521545021008Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetranscriptional regulator, AraC family1e-34147
NC_008545:115292:1348071348071358141008Burkholderia cenocepacia HI2424 plasmid 1, complete sequencetranscriptional regulator, AraC family3e-34145
NC_010557:679656:7013457013457023731029Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, AraC family1e-30134
NC_017986:4790482:481891148189114819822912Pseudomonas putida ND6 chromosome, complete genomeputative AraC family transcriptional regulator2e-30133
NC_008392:1029134:1032894103289410339191026Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, AraC family2e-30133
NC_007511:3103999:3124442312444231254461005Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, AraC family8e-26118
NC_014323:3976351:403368940336894034684996Herbaspirillum seropedicae SmR1 chromosome, complete genomeAraC family transcription regulator protein1e-23110
NC_016002:2652500:2664380266438026653991020Pseudogulbenkiania sp. NH8B, complete genomeAraC family transcriptional regulator3e-1892.8
NC_012721:2556160:2556160255616025571941035Burkholderia glumae BGR1 chromosome 2, complete genomeTranscriptional regulator, AraC family protein2e-1480.5
NC_014118:987889:101553710155371016523987Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, AraC family2e-1480.1
NC_011666:1572487:159137615913761592359984Methylocella silvestris BL2, complete genometranscriptional regulator, AraC family1e-1377.4
NC_015726:2177783:218982021898202190776957Cupriavidus necator N-1 chromosome 1, complete sequenceAraC family transcriptional regulator2e-1377
NC_006361:4521820:452975545297554530690936Nocardia farcinica IFM 10152, complete genomeputative transcriptional regulator4e-1375.9
NC_015312:6717973:6725802672580267268601059Pseudonocardia dioxanivorans CB1190 chromosome, complete genomeAraC family transcriptional regulator6e-1375.1
NC_014814:3364336:337792233779223378278357Mycobacterium sp. Spyr1 chromosome, complete genometranscriptional regulator, AraC family2e-1273.6
NC_015723:2550000:2553741255374125548051065Cupriavidus necator N-1 chromosome 2, complete sequenceAraC family transcriptional regulator3e-1273.2
NC_002678:5714000:573007257300725730971900Mesorhizobium loti MAFF303099, complete genometranscriptional regulator3e-1272.8
NC_007298:1418500:145904814590481460040993Dechloromonas aromatica RCB, complete genomeHelix-turn-helix, AraC type6e-1272
NC_010296:2200054:2218871221887122198751005Microcystis aeruginosa NIES-843, complete genometranscriptional regulator1e-1171.2
NC_012522:5847699:5855486585548658564901005Rhodococcus opacus B4, complete genomeputative thc operon regulatory protein7e-1168.6
NC_016147:2964178:297845229784522979423972Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeAraC family regulatory protein2e-1067
NC_009338:555587:5624375624375635461110Mycobacterium gilvum PYR-GCK chromosome, complete genomehelix-turn-helix domain-containing protein2e-1066.6
NC_016604:3184855:3214230321423032152311002Mycobacterium rhodesiae NBB3 chromosome, complete genometranscriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain3e-1066.6
NC_013947:326980:3285913285913296791089Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, AraC family3e-1066.6
NC_009077:1725683:177062317706231771621999Mycobacterium sp. JLS, complete genomehelix-turn-helix- domain containing protein, AraC type3e-1066.2
NC_008705:1839983:1851259185125918523681110Mycobacterium sp. KMS, complete genomehelix-turn-helix- domain containing protein, AraC type3e-1066.2
NC_008705:1790222:1837844183784418389531110Mycobacterium sp. KMS, complete genomehelix-turn-helix- domain containing protein, AraC type3e-1066.2
NC_017506:1100679:112975111297511130716966Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein6e-1065.5
NC_008319:262894:273633273633274598966Synechococcus sp. CC9311, complete genomeprobable transcriptional regulator, AraC family, putative1e-0964.7
NC_010676:2975572:298379829837982984772975Burkholderia phytofirmans PsJN chromosome 2, complete sequencetranscriptional regulator, AraC family1e-0964.7
NC_004463:8401060:8411896841189684129091014Bradyrhizobium japonicum USDA 110, complete genometranscriptional regulatory protein2e-0963.5
NC_011000:1216430:1250917125091712520081092Burkholderia cenocepacia J2315 chromosome 1, complete sequenceAraC family regulatory protein2e-0963.5
NC_009077:2308634:231165523116552312050396Mycobacterium sp. JLS, complete genomehelix-turn-helix- domain containing protein, AraC type8e-0961.6
NC_020302:1241504:124750612475061248498993Corynebacterium halotolerans YIM 70093 = DSM 44683, completeAraC family transcriptional regulator8e-0961.6
NC_007435:566436:5857705857705871971428Burkholderia pseudomallei 1710b chromosome II, complete sequenceHrpB2e-0860.5
NC_009078:1841023:1858480185848018599311452Burkholderia pseudomallei 1106a chromosome II, complete sequenceHrpB2e-0860.5
NC_006351:1886475:1905540190554019069911452Burkholderia pseudomallei K96243 chromosome 2, complete sequenceAraC family regulator of pathogenicity genes2e-0860.5
NC_009075:1906915:1924372192437219258231452Burkholderia pseudomallei 668 chromosome II, complete sequenceHrpB2e-0860.1
NC_007492:3384077:340643334064333407407975Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, AraC family2e-0860.1
NC_011958:735755:786309786309787232924Rhodobacter sphaeroides KD131 chromosome 2, complete genomeHelix-turn-helix-domain containing protein, AraC type5e-0858.9
NC_008319:1950889:196094019609401961896957Synechococcus sp. CC9311, complete genometranscriptional regulator, araC family domain protein7e-0858.5
NC_010717:3933485:3959093395909339604481356Xanthomonas oryzae pv. oryzae PXO99A, complete genomeHrpX/HrpB6e-0858.5
NC_007513:1503955:151547915154791516435957Synechococcus sp. CC9902, complete genometranscriptional regulator, AraC family9e-0858.2
NC_010501:3448389:347064834706483471556909Pseudomonas putida W619, complete genometranscriptional regulator, AraC family2e-0757
NC_016582:11380000:113865851138658511387517933Streptomyces bingchenggensis BCW-1 chromosome, complete genomeAraC family transcription regulator4e-0756.2
NC_007951:3655088:365508836550883656071984Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, AraC family8e-0755.1
NC_010170:1580832:158669015866901587673984Bordetella petrii, complete genometranscriptional regulator, AraC family8e-0755.1
NC_010501:3013103:302656130265613027469909Pseudomonas putida W619, complete genometranscriptional regulator, AraC family9e-0754.7
NC_015957:1070500:109744310974431098348906Streptomyces violaceusniger Tu 4113 chromosome, complete genomeAraC family transcriptional regulator1e-0654.3
NC_009482:1718000:173879917387991739746948Synechococcus sp. RCC307 chromosome, complete genomeAraC-type DNA-binding domain-containing protein1e-0654.3
NC_016845:2655512:266169226616922662606915Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative ARAC-type regulatory protein2e-0653.9
NC_009648:1882500:188609218860921887006915Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative ARAC-type regulatory protein2e-0653.9
NC_015410:2258800:228399222839922284939948Pseudomonas mendocina NK-01 chromosome, complete genomeAraC family transcriptional regulator2e-0653.5
NC_002927:4130697:414150941415094142483975Bordetella bronchiseptica RB50, complete genomeTranscriptional regulator3e-0653.1
NC_017223:2618535:262834226283422629316975Bordetella pertussis CS chromosome, complete genometranscriptional regulator3e-0653.1
NC_002929:2589202:260370626037062604680975Bordetella pertussis Tohama I, complete genomeTranscriptional regulator3e-0653.1
NC_002928:3715492:3726212372621237272161005Bordetella parapertussis 12822, complete genomeTranscriptional regulator3e-0652.8