Pre_GI: BLASTP Hits

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Query: NC_008258:2190635:2200287 Shigella flexneri 5 str. 8401, complete genome

Start: 2200287, End: 2200829, Length: 543

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:2341127:235347423534742354016543Shigella sonnei 53G, complete genomefimbrial protein domain-containing protein4e-85313
NC_007384:2251792:226415422641542264696543Shigella sonnei Ss046, complete genomeputative fimbrial-like protein4e-85313
CP002185:2347413:236027323602732360815543Escherichia coli W, complete genomepredicted fimbrial-like adhesin protein4e-85313
NC_010473:2267851:228071022807102281252543Escherichia coli str. K-12 substr. DH10B, complete genomepredicted fimbrial-like adhesin protein9e-85312
NC_000913:2180855:218970221897022190244543Escherichia coli K12, complete genomepredicted fimbrial-like adhesin protein9e-85312
AC_000091:2185369:219501421950142195556543Escherichia coli W3110 DNA, complete genomepredicted fimbrial-like adhesin protein9e-85312
NC_010468:1694729:170277517027751703317543Escherichia coli ATCC 8739, complete genomeFimbrial protein9e-85312
NC_012759:2069326:208218520821852082727543Escherichia coli BW2952 chromosome, complete genomeputative fimbrial-like adhesin protein9e-85312
NC_011741:2239637:225122122512212251763543Escherichia coli IAI1 chromosome, complete genomeputative fimbrial-like adhesin protein1e-84311
CU928160:2239637:225122122512212251763543Escherichia coli IAI1 chromosome, complete genomeputative fimbrial-like adhesin protein1e-84311
NC_011750:955451:964085964085964627543Escherichia coli IAI39 chromosome, complete genomeputative fimbrial-like adhesin protein1e-84311
NC_009800:2225182:223402922340292234571543Escherichia coli HS, complete genomefimbrial protein3e-84310
NC_011745:2399313:241089924108992411441543Escherichia coli ED1a chromosome, complete genomeputative fimbrial-like adhesin protein4e-83306
NC_004337:2185282:219798621979862198510525Shigella flexneri 2a str. 301, complete genomeputative fimbrial-like protein4e-79293
NC_004741:2169877:217873421787342179258525Shigella flexneri 2a str. 2457T, complete genomeputative fimbrial-like protein4e-79293
NC_017328:2225418:223808222380822238606525Shigella flexneri 2002017 chromosome, complete genomeputative fimbrial-like protein4e-79293
NC_013008:2851342:286320428632042863746543Escherichia coli O157:H7 str. TW14359 chromosome, complete genomefimbrial-like adhesin protein3e-73273
NC_011353:2852362:286422328642232864765543Escherichia coli O157:H7 str. EC4115 chromosome, complete genomefimbrial protein3e-73273
NC_002695:2854629:286741228674122867954543Escherichia coli O157:H7 str. Sakai, complete genomeputative fimbrial-like protein3e-73273
NC_002655:2925787:293764329376432938185543Escherichia coli O157:H7 EDL933, complete genomeputative fimbrial-like protein3e-73273
NC_011740:2220251:224149122414912242024534Escherichia fergusonii ATCC 35469, complete genomeputative Paral fimbrial-like protein1e-0652.4
NC_011751:12000:224342243422967534Escherichia coli UMN026 chromosome, complete genomeputative fimbrial-like protein1e-0549.7
NC_002655:12000:224952249523028534Escherichia coli O157:H7 EDL933, complete genomeputative type-1 fimbrial protein9e-0649.7
NC_002695:12000:224942249423027534Escherichia coli O157:H7 str. Sakai, complete genomeputative fimbrial protein9e-0649.7
NC_011353:12000:224952249523028534Escherichia coli O157:H7 str. EC4115 chromosome, complete genomefimbrial protein9e-0649.7
NC_013008:11938:224952249523028534Escherichia coli O157:H7 str. TW14359 chromosome, complete genometype-1 fimbrial protein9e-0649.7
NC_013941:12000:224762247623009534Escherichia coli O55:H7 str. CB9615 chromosome, complete genometype-1 fimbrial protein9e-0649.7
NC_011750:12047:262872628726820534Escherichia coli IAI39 chromosome, complete genomeputative fimbrial-like protein1e-0549.7