Pre_GI: BLASTP Hits

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Query: NC_008258:2045000:2059917 Shigella flexneri 5 str. 8401, complete genome

Start: 2059917, End: 2060591, Length: 675

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:385552:403989403989404663675Shigella flexneri 2002017 chromosome, complete genomeISSfl4 ORF15e-130463
NC_017319:155958:169634169634170308675Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceISSfl4 ORF15e-130463
NC_004337:367687:386125386125386799675Shigella flexneri 2a str. 301, complete genomeISSfl4 ORF15e-130463
NC_008258:401786:423776423776424450675Shigella flexneri 5 str. 8401, complete genomeISSfl4 ORF15e-130463
NC_004851:157675:173438173438174112675Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceISSfl4 ORF12e-129461
NC_004337:3590323:385190438519043852578675Shigella flexneri 2a str. 301, complete genomeISSfl4 ORF12e-129461
NC_004851:157675:169705169705170379675Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceISSfl4 ORF12e-129461
AP010958:3627355:362961136296113630285675Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein3e-121434
AP010958:5090696:511675551167555117429675Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein3e-121434
NC_011601:3338888:334114433411443341818675Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase Orf1 of IS6833e-121434
NC_013353:3627355:362961136296113630285675Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein3e-121434
NC_013353:5090696:511675551167555117429675Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein3e-121434
NC_013941:3676146:367840236784023679076675Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeISSfl3 OrfA1e-120432
NC_002655:3919545:392180139218013922475675Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by ISEc82e-120431
NC_002695:3852233:385448938544893855163675Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-120431
NC_011353:3956630:395888639588863959560675Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeISSfl4 ORF12e-120431
NC_013008:3911356:391361239136123914286675Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-120431
NC_017319:155958:173413173413174042630Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceISSfl4 ORF12e-119427
NC_007607:87000:116076116076116663588Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceISSfl4 ORF12e-99361
NC_004741:366822:385926385926386423498Shigella flexneri 2a str. 2457T, complete genomeISSfl3 orfA1e-93342
NC_010660:33109:373143731437610297Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequence7e-45180
NC_013716:2476334:248499424849942485671678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A6e-34144
NC_013716:3708415:372254337225433723220678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A6e-34144
NC_013716:1138441:114611011461101146787678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A6e-34144
NC_013716:4824541:483553548355354836212678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A6e-34144
NC_013716:2764550:279093027909302791607678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A6e-34144
NC_013716:4306695:431035743103574311034678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A6e-34144
NC_013716:3327881:335750833575083358185678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A6e-34144
NC_013716:2764550:279183027918302792507678Citrobacter rodentium ICC168, complete genomeISCro1 transposase A6e-34144
NC_013361:3313284:331480333148033315450648Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-33142
NC_009790:42112:442404424044917678Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS66 family element, orf12e-33142
NC_009801:3374501:338814533881453388822678Escherichia coli E24377A, complete genomeIS66 family element, orf12e-33142
NC_014839:68308:881018810188736636Pantoea sp. At-9b plasmid pPAT9B02, complete sequencetransposase IS3/IS911 family protein7e-33140
NC_014228:2270000:229328422932842293916633Xenorhabdus nematophila ATCC 19061, complete genomeputative transposase3e-32138
NC_007385:157516:161897161897162565669Shigella sonnei Ss046 plasmid pSS_046, complete sequenceputative transposase3e-25115
NC_007607:87000:901639016390831669Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceputative transposase7e-25114
NC_013716:5201097:526588652658865266536651Citrobacter rodentium ICC168, complete genomeIS679 transposase A2e-24112
NC_013361:3867558:389845438984543898939486Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein4e-2098.2
NC_009801:1756610:175854817585481759012465Escherichia coli E24377A, complete genomeIS66 family element, orf12e-1996.3
NC_010660:33109:376623766238081420Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS66 family element, orf11e-1479.7
CP002797:4603787:462158746215874622012426Escherichia coli NA114, complete genomeIS-66 transposase2e-1479.3
NC_013941:3676146:370144037014403701865426Escherichia coli O55:H7 str. CB9615 chromosome, complete genometransposase-like protein3e-1479
NC_013353:5090696:509396850939685094393426Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein3e-1479
NC_013353:3627355:365264736526473653072426Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein3e-1479
AP010958:3627355:365264736526473653072426Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein3e-1479
AP010958:5090696:509396850939685094393426Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein3e-1479
NC_011748:4792703:479270347927034793128426Escherichia coli 55989, complete genomeputative transposase OrfA from plasmid origin4e-1478.2
CU928145:4792703:479270347927034793128426Escherichia coli 55989 chromosome, complete genomeputative transposase OrfA from plasmid origin4e-1478.2
NC_011601:3338888:336418933641893364614426Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometransposase Orf1 of IS6829e-1477
NC_011745:4862218:486790848679084868333426Escherichia coli ED1a chromosome, complete genomeputative transposase4e-1375.1
NC_011751:3453683:350329135032913503716426Escherichia coli UMN026 chromosome, complete genomeputative transposase7e-1374.3
NC_016845:2274500:229580922958092296213405Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein4e-1168.2
NC_004431:3409389:341047334104733410877405Escherichia coli CFT073, complete genomeUnknown protein encoded by ISEc8 within prophage6e-1167.8
NC_007941:11319:331303313033534405Escherichia coli UTI89 plasmid pUTI89, complete sequencehypothetical protein6e-1167.8
NC_007946:4779745:481483048148304815192363Escherichia coli UTI89, complete genomehypothetical protein2e-1065.9
NC_004431:3409389:348025334802533480615363Escherichia coli CFT073, complete genomeUnknown in ISEc84e-1065.1
CP002797:4775780:479493447949344795296363Escherichia coli NA114, complete genomePutative transposase4e-1065.1
NC_004431:3409389:345496234549623455399438Escherichia coli CFT073, complete genomeUnknown in putative ISEc86e-1064.3
NC_011751:3453683:347806134780613478498438Escherichia coli UMN026 chromosome, complete genomeputative transposase6e-1064.3
CU928159:30700:331343313433571438Escherichia coli str. 55989 plasmid 55989p, complete genomeconserved hypothetical protein, putative transposase IS3 family6e-1064.3
NC_008253:334467:341569341569341931363Escherichia coli 536, complete genomeputative IS orf1e-0860.1
NC_007510:1959883:200343920034392003855417Burkholderia sp. 383 chromosome 1, complete sequencetransposase IS3/IS9112e-0859.3
NC_009524:1796000:180997918099791810386408Psychrobacter sp. PRwf-1 chromosome, complete genometransposase IS3/IS911 family protein2e-0859.3
NC_013716:5201097:526916752691675269469303Citrobacter rodentium ICC168, complete genome3e-0858.9
NC_013008:3525428:354178635417863542187402Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein1e-0756.6
NC_013008:1715831:172970317297031730104402Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase1e-0756.6
NC_002695:1364833:138386013838601384261402Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-0756.6
NC_009254:637952:644979644979645398420Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS3/IS911 family protein1e-0756.6
NC_014029:331919:392963392963393319357Yersinia pestis Z176003 chromosome, complete genomehypothetical protein2e-0756.2
NC_008253:4735418:477367147736714773937267Escherichia coli 536, complete genomehypothetical protein2e-0756.2
NC_007951:4576825:458212245821224582559438Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase2e-0756.2
NC_002655:2264773:227763922776392278040402Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded in ISEc82e-0755.8
NC_004431:3409389:342716934271693427570402Escherichia coli CFT073, complete genomeUnknown protein encoded by ISEc8 within prophage2e-0755.8
NC_002695:4584177:458605945860594586460402Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-0755.8
AP010958:3853082:387813638781363878537402Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein2e-0755.8
NC_002655:4653160:465504246550424655443402Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by ISEc8 within prophage CP-933L2e-0755.8
NC_011745:333061:335652335652336053402Escherichia coli ED1a chromosome, complete genomeputative transposase, IS3 family2e-0755.8
NC_013008:1307392:132773213277321328133402Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein2e-0755.8
NC_013353:3853082:387813638781363878537402Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-0755.8
NC_013361:1284579:130444313044431304844402Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-0755.8
NC_009254:74000:939439394394362420Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS3/IS911 family protein2e-0755.8
NC_009256:2907998:291244329124432912877435Burkholderia vietnamiensis G4 chromosome 1, complete sequencetransposase IS3/IS911 family protein3e-0755.5
NC_009255:1105786:111509111150911115525435Burkholderia vietnamiensis G4 chromosome 2, complete sequencetransposase IS3/IS911 family protein3e-0755.5
NC_009254:745706:763090763090763524435Burkholderia vietnamiensis G4 chromosome 3, complete sequencetransposase IS3/IS911 family protein3e-0755.5
NC_010660:86445:950599505995448390Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS66 family element, orf13e-0755.5
NC_010660:33109:446374463745026390Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS66 family element, orf13e-0755.5
NC_014539:888562:893145893145893561417Burkholderia sp. CCGE1003 chromosome 1, complete sequencetransposase IS3/IS911 family protein3e-0755.5
NC_009790:42112:671896718967578390Escherichia coli E24377A plasmid pETEC_74, complete sequenceIS66 family element3e-0755.5
NC_009801:1392696:140961714096171410006390Escherichia coli E24377A, complete genomeIS66 family element, orf13e-0755.5
NC_009801:1756610:176096717609671761356390Escherichia coli E24377A, complete genomeIS66 family element, orf13e-0755.5
NC_009801:2898426:294035029403502940739390Escherichia coli E24377A, complete genomeIS66 family element, orf13e-0755.5
NC_009788:16360:182921829218681390Escherichia coli E24377A plasmid pETEC_73, complete sequenceIS66 family element, orf13e-0755.5
NC_006177:280234:3076823076823092081527Symbiobacterium thermophilum IAM 14863, complete genometransposase subunit3e-0755.5
NC_002695:3468873:348280134828013483181381Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-0755.5
NC_002695:1794635:180913718091371809517381Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein3e-0755.5
NC_013008:4643825:464522546452254645605381Escherichia coli O157:H7 str. TW14359 chromosome, complete genometransposase, ISEc83e-0755.5
NC_011000:1262324:128276612827661283161396Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative transposase4e-0755.1
NC_011001:302500:303100303100303495396Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative transposase4e-0755.1
NC_007951:769500:778440778440778835396Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase9e-0753.9
NC_006177:1422932:143417414341741434545372Symbiobacterium thermophilum IAM 14863, complete genometransposase-like protein1e-0653.5
NC_013860:171235:192690192690193112423Azospirillum sp. B510 plasmid pAB510f, complete sequencetransposase1e-0653.5
NC_006177:46745:648886488865106219Symbiobacterium thermophilum IAM 14863, complete genomeputative transposase subunit1e-0653.5
NC_006177:2883476:2894345289434528958711527Symbiobacterium thermophilum IAM 14863, complete genometransposase subunit1e-0653.1
NC_007651:1620000:164870416487041649069366Burkholderia thailandensis E264 chromosome I, complete sequencetransposase1e-0653.1
NC_007650:84140:105871105871106236366Burkholderia thailandensis E264 chromosome II, complete sequencetransposase1e-0653.1
NC_007651:1726472:173842317384231738788366Burkholderia thailandensis E264 chromosome I, complete sequencetransposase1e-0653.1
NC_007650:420745:440579440579440944366Burkholderia thailandensis E264 chromosome II, complete sequencetransposase1e-0653.1
NC_007651:3064530:315599031559903156355366Burkholderia thailandensis E264 chromosome I, complete sequencetransposase1e-0653.1
NC_007908:1252189:125737812573781257782405Rhodoferax ferrireducens T118, complete genometransposase IS3/IS9112e-0652.8
NC_007908:3363902:338422333842233384627405Rhodoferax ferrireducens T118, complete genometransposase IS3/IS9112e-0652.8
NC_003296:673790:707962707962708330369Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeISRSO10-TRANSPOSASE ORFA PROTEIN2e-0652.4
NC_014307:1131241:114283311428331143228396Ralstonia solanacearum CFBP2957 chromosome, complete genometransposase (orfa protein )2e-0652.4
NC_008463:5246954:530117353011735301439267Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative transposase2e-0652.4
NC_003296:556836:578373578373578741369Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completeISRSO10-TRANSPOSASE ORFA PROTEIN2e-0652.4
NC_020209:4943734:496661549666154967007393Pseudomonas poae RE*1-1-14, complete genomeputative transposase4e-0651.6
NC_020209:4943734:496484449648444965236393Pseudomonas poae RE*1-1-14, complete genomeputative transposase4e-0651.6
NC_012721:1635999:164431916443191644684366Burkholderia glumae BGR1 chromosome 2, complete genomeTransposase4e-0651.6
NC_012724:2547500:257322125732212573586366Burkholderia glumae BGR1 chromosome 1, complete genomeTransposase4e-0651.6
NC_020209:1949500:196784319678431968235393Pseudomonas poae RE*1-1-14, complete genomeputative transposase5e-0651.2
NC_016588:133943:154640154640155050411Azospirillum lipoferum 4B plasmid AZO_p6, complete sequenceTransposase of ISAli10, IS66 family. ORFA6e-0651.2
NC_011083:4547825:460386946038694604237369Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transposase8e-0650.8
NC_016822:2940000:295990729599072960308402Shigella sonnei 53G, complete genomehypothetical protein8e-0650.8
NC_016002:1048420:105494610549461055332387Pseudogulbenkiania sp. NH8B, complete genometransposase IS3/IS911 family protein7e-0650.8
NC_011004:1174813:117930011793001179749450Rhodopseudomonas palustris TIE-1, complete genometransposase IS3/IS911 family protein6e-0650.8
NC_015383:229036:231211231211231741531Burkholderia gladioli BSR3 plasmid bgla_4p, complete sequencetransposase IS3/IS911 family protein8e-0650.4
NC_007951:769500:789737789737790144408Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase9e-0650.4