Pre_GI: BLASTP Hits

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Query: NC_008258:1934479:1951136 Shigella flexneri 5 str. 8401, complete genome

Start: 1951136, End: 1951486, Length: 351

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:1320287:132747313274731327823351Shigella sonnei Ss046, complete genome2e-61234
NC_016822:1304398:131031713103171310664348Shigella sonnei 53G, complete genomehypothetical protein5e-61232
NC_011415:2153243:216737321673732168098726Escherichia coli SE11 chromosome, complete genomehypothetical protein9e-61231
NC_008150:1593500:161406016140601614875816Yersinia pestis Antiqua, complete genomehypothetical protein2e-28124
NC_010634:2297000:231661023166102317425816Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein2e-28124
NC_004547:2810151:282692928269292827279351Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeconserved hypothetical protein (partial)5e-28122
NC_009654:4253431:425557942555794256442864Marinomonas sp. MWYL1, complete genomehypothetical protein5e-1786.7
NC_009348:3029963:306470130647013065576876Aeromonas salmonicida subsp. salmonicida A449, complete genomehypothetical protein1e-1168.6
NC_011831:4043802:404380240438024044656855Chloroflexus aggregans DSM 9485, complete genomeprotein of unknown function DUF721e-1065.1
NC_005027:4180502:418446241844624185385924Rhodopirellula baltica SH 1, complete genomehypothetical protein9e-0855.8
NC_009767:2866668:289419428941942895075882Roseiflexus castenholzii DSM 13941, complete genomeprotein of unknown function DUF722e-0754.3