Pre_GI: BLASTP Hits

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Query: NC_008258:1873805:1883130 Shigella flexneri 5 str. 8401, complete genome

Start: 1883130, End: 1883402, Length: 273

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011751:1405381:141546714154671415883417Escherichia coli UMN026 chromosome, complete genomeHost-nuclease inhibitor protein gam from bacteriophage origin9e-39158
NC_002655:1332961:133812413381241338420297Escherichia coli O157:H7 EDL933, complete genomeputative host-nuclease inhibitor protein Gam of bacteriphage BP-933W1e-38158
NC_011751:643976:649051649051649347297Escherichia coli UMN026 chromosome, complete genomeputative host-nuclease inhibitor protein Gam of bacteriophage1e-38158
NC_011353:2957962:297815929781592978455297Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehost-nuclease inhibitor protein Gam1e-38158
NC_013008:2910567:293303029330302933326297Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeprotein gam1e-38158
NC_013361:3112023:313300331330033133299297Escherichia coli O26:H11 str. 11368 chromosome, complete genomehost-nuclease inhibitor protein1e-38158
NC_013941:699286:701389701389701685297Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeHost-nuclease inhibitor protein gam1e-38158
NC_011353:3276734:328702732870273287323297Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehost-nuclease inhibitor protein Gam4e-38156
NC_013008:3231414:324189832418983242194297Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehost-nuclease inhibitor protein Gam4e-38156
NC_012759:4132527:413716741371674137463297Escherichia coli BW2952 chromosome, complete genomeHost-nuclease inhibitor protein gam4e-38156
NC_011748:824367:826178826178826474297Escherichia coli 55989, complete genomeputative host-nuclease inhibitor protein Gam of bacteriophage3e-38156
CU928145:824367:826178826178826474297Escherichia coli 55989 chromosome, complete genomeputative host-nuclease inhibitor protein Gam of bacteriophage3e-38156
NC_012947:3015985:302403230240323024448417Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeHost-nuclease inhibitor Gam3e-38156
NC_004431:1401681:140808814080881408384297Escherichia coli CFT073, complete genomePutative host-nuclease inhibitor protein Gam of bacteriphage3e-38156
NC_007946:1239278:124594312459431246239297Escherichia coli UTI89, complete genomeputative host-nuclease inhibitor protein Gam of bacteriphage3e-38156
NC_008563:1175035:118333111833311183627297Escherichia coli APEC O1, complete genomeputative host-nuclease inhibitor protein Gam of bacteriphage3e-38156
NC_011742:1177946:118691911869191187215297Escherichia coli S88 chromosome, complete genomehost-nuclease inhibitor protein Gam of bacteriophage3e-38156
NC_011415:600375:614659614659614955297Escherichia coli SE11 chromosome, complete genomephage host-nuclease inhibitor protein1e-37155
NC_013941:975353:985742985742986038297Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeGam protein5e-38155
NC_013353:5361207:537251553725155372811297Escherichia coli O103:H2 str. 12009, complete genomehost-nuclease inhibitor protein7e-37152
AP010958:5361207:537251553725155372811297Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative host-nuclease inhibitor protein7e-37152
NC_020063:2565605:258926725892672589563297Enterobacteriaceae bacterium strain FGI 57, complete genomeHost-nuclease inhibitor protein Gam4e-32136
NC_009778:1556222:156375315637531564028276Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein3e-0650.8
NC_020260:1615135:162266616226661622941276Cronobacter sakazakii Sp291, complete genomehypothetical protein9e-0648.9