Pre_GI: BLASTP Hits

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Query: NC_008258:1784637:1802316 Shigella flexneri 5 str. 8401, complete genome

Start: 1802316, End: 1803389, Length: 1074

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:1783645:1802878180287818040651188Shigella flexneri 2a str. 301, complete genomeIS91 ORF0738
NC_017328:1835108:1855376185537618566081233Shigella flexneri 2002017 chromosome, complete genomeIS91 ORF0736
NC_004741:1823000:1839823183982318410431221Shigella flexneri 2a str. 2457T, complete genomeIS91 orf0719
NC_013364:1997891:2022346202234620235331188Escherichia coli O111:H- str. 11128, complete genomeputative IS91 transposase0699
NC_009786:43331:579845798458729746Escherichia coli E24377A plasmid pETEC_80, complete sequence2e-81303
NC_009786:43331:546075460755352746Escherichia coli E24377A plasmid pETEC_80, complete sequence2e-81303
NC_004851:191709:2114272114272126231197Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceIS1294 transposase1e-76286
NC_007608:97092:1146531146531158521200Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS1294 transposase5e-60231
NC_007608:97092:1183971183971196051209Shigella boydii Sb227 plasmid pSB4_227, complete sequenceIS1294 transposase7e-60231
NC_010660:175200:2009632009632021471185Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS1294, transposase5e-59228
NC_010660:175200:1954511954511966501200Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIS1294, transposase4e-59228
NC_007606:3755155:3755155375515537563631209Shigella dysenteriae Sd197, complete genomeIS1294 ORF2e-57223
NC_007607:87000:1089721089721101801209Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS1294 transposase3e-57222
NC_007607:87000:1145111145111158031293Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequenceIS1294 transposase4e-57222
NC_017319:192482:211681211681212505825Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS1294 transposase1e-43177
NC_014228:4360676:437700743770074377915909Xenorhabdus nematophila ATCC 19061, complete genometransposase (fragment)3e-41169
NC_009837:92000:934139341394240828Escherichia coli APEC O1 plasmid pAPEC-O1-ColBM, complete sequencetransposase6e-34145
NC_008340:2034810:2053054205305420543431290Alkalilimnicola ehrlichei MLHE-1, complete genomeputative transposase2e-27123
NC_007626:959684:9953579953579965291173Magnetospirillum magneticum AMB-1, complete genomePutative transposase Y4QJ5e-24112
NC_019897:209523:2161202161202173671248Thermobacillus composti KWC4 chromosome, complete genometransposase2e-23110
NC_014098:2809689:2814351281435128154781128Bacillus tusciae DSM 2912 chromosome, complete genomeputative transposase7e-23108
NC_014098:1670327:1687221168722116883481128Bacillus tusciae DSM 2912 chromosome, complete genomeputative transposase7e-23108
NC_009483:3331500:3331529333152933327041176Geobacter uraniireducens Rf4 chromosome, complete genomeputative transposase1e-22107
NC_016048:2907702:2987542298754229886361095Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase4e-21102
NC_016048:987699:9961059961059971991095Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase4e-21102
NC_016048:797762:8025328025328036261095Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase4e-21102
NC_021184:3497000:3498189349818934993341146Desulfotomaculum gibsoniae DSM 7213, complete genomePutative transposase1e-20101
NC_020291:2291418:2312284231228423134441161Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeputative transposase1e-20101
NC_015703:5865921:5882682588268258850812400Runella slithyformis DSM 19594 chromosome, complete genome9e-21101
NC_010625:1602191:1606485160648516077051221Burkholderia phymatum STM815 plasmid pBPHY01, complete sequenceputative transposase3e-1996.3
NC_017319:192482:211310211310211573264Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceIS1294 transposase4e-1995.9
NC_015572:2713599:2720014272001427211261113Methylomonas methanica MC09 chromosome, complete genometransposase4e-1995.9
NC_015914:4248000:4261796426179642629681173Cyclobacterium marinum DSM 745 chromosome, complete genometransposase5e-1995.5
NC_015914:4248000:4256781425678142579531173Cyclobacterium marinum DSM 745 chromosome, complete genometransposase5e-1995.5
NC_009483:3644677:3678183367818336792801098Geobacter uraniireducens Rf4 chromosome, complete genomeputative transposase1e-1894.4
NC_019973:2744000:2762603276260327636971095Mesorhizobium australicum WSM2073, complete genomePutative transposase4e-1892.4
NC_014923:2672000:2690550269055026916441095Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completetransposase4e-1892.4
NC_015675:2839000:2857550285755028587431194Mesorhizobium opportunistum WSM2075 chromosome, complete genomeputative transposase4e-1892.4
NC_015186:2197236:2255598225559822567911194Acidiphilium multivorum AIU301, complete genomeputative transposase for insertion sequence element6e-1892
NC_016901:2070121:2072025207202520731431119Shewanella baltica OS678 chromosome, complete genometransposase7e-1891.7
NC_009997:2069894:2071438207143820725561119Shewanella baltica OS195, complete genomeputative transposase7e-1891.7
NC_013062:1298500:1301324130132413024301107Flavobacteriaceae bacterium 3519-10, complete genometransposase1e-1791.3
NC_012586:897148:9016139016139027911179Rhizobium sp. NGR234 plasmid pNGR234b, complete sequenceputative transposase number 2 for insertion sequence NGRIS-16c2e-1790.5
NC_018721:2872780:2875568287556828767131146Psychroflexus torquis ATCC 700755 chromosome, complete genometransposase, IS91 family6e-1788.6
NC_019902:2943719:2958875295887529600081134Thioalkalivibrio nitratireducens DSM 14787, complete genometransposase, IS91 family, putative5e-1685.5
NC_012791:4736084:4752157475215747533531197Variovorax paradoxus S110 chromosome 1, complete genomeputative transposase8e-1581.6
NC_015675:2839000:285385628538562854743888Mesorhizobium opportunistum WSM2075 chromosome, complete genomeputative transposase2e-1480.5
NC_019973:2744000:275890927589092759796888Mesorhizobium australicum WSM2073, complete genome2e-1480.5
NC_014923:2672000:268685626868562687743888Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete2e-1480.5
NC_012108:4971086:499654649965464997478933Desulfobacterium autotrophicum HRM2, complete genometransposase for insertion sequence 801 (transposase 32 family protein)3e-1479.7
NC_012108:2220983:222098322209832221915933Desulfobacterium autotrophicum HRM2, complete genometransposase for insertion sequence 801 (transposase 32 family protein)3e-1479.7
NC_010681:1202929:1217523121752312186921170Burkholderia phytofirmans PsJN chromosome 1, complete sequenceputative transposase7e-1478.6
NC_016048:2907702:299990729999073000872966Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase4e-1375.9
NC_020911:83717:837178371784598882Octadecabacter antarcticus 307, complete genomeIS91-family transposase4e-1375.9
NC_019902:1681320:1693466169346616945991134Thioalkalivibrio nitratireducens DSM 14787, complete genometransposase, IS91 family, putative4e-1375.9
NC_018645:2390032:2390032239003223911171086Desulfobacula toluolica Tol2, complete genometransposase, IS801/IS1294 family5e-1375.5
NC_018645:2390032:2402814240281424038991086Desulfobacula toluolica Tol2, complete genometransposase, IS801/IS1294 family5e-1375.5
NC_016048:308342:335072335072335743672Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase5e-1375.5
NC_014836:2620871:2629601262960126307101110Desulfurispirillum indicum S5 chromosome, complete genometransposase for insertion sequence 801 (transposase 32 family protein)3e-1273.2
NC_020908:4263552:426776842677684268616849Octadecabacter arcticus 238, complete genomeIS91 family transposase1e-1171.2
NC_020908:2466446:248083424808342481604771Octadecabacter arcticus 238, complete genomeIS91 family transposase2e-1170.5
NC_011894:957897:9626549626549638621209Methylobacterium nodulans ORS 2060, complete genomeputative transposase1e-1067.4
NC_011753:1680738:169142916914291692160732Vibrio splendidus LGP32 chromosome 1, complete genomePartial transposase ; IS91 family8e-1065.1
NC_012108:2874831:290174329017432902423681Desulfobacterium autotrophicum HRM2, complete genometransposase (IS801 family protein)3e-0963.2
NC_013194:2020134:2034160203416020352661107Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completeputative transposase3e-0963.2
NC_016901:2594942:2621901262190126229861086Shewanella baltica OS678 chromosome, complete genometransposase7e-0962
NC_009997:2635025:2661984266198426630691086Shewanella baltica OS195, complete genometransposase7e-0962
NC_009483:3331500:333406533340653334634570Geobacter uraniireducens Rf4 chromosome, complete genomehypothetical protein8e-0961.6
NC_016048:2907702:300742030074203007950531Oscillibacter valericigenes Sjm18-20, complete genomeputative transposase2e-0757.4
NC_016626:1825845:186187418618741862758885Burkholderia sp. YI23 plasmid byi_1p, complete sequenceputative transposase2e-0756.6
NC_009483:3331500:333697233369723337619648Geobacter uraniireducens Rf4 chromosome, complete genomeputative transposase2e-0653.9