Pre_GI: BLASTP Hits

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Query: NC_008258:1784637:1795663 Shigella flexneri 5 str. 8401, complete genome

Start: 1795663, End: 1797051, Length: 1389

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:1835108:1848882184888218502701389Shigella flexneri 2002017 chromosome, complete genomeNitrite extrusion protein 20828
NC_004337:1783645:1796339179633917977271389Shigella flexneri 2a str. 301, complete genomenitrite extrusion protein 20828
NC_004741:1823000:1833285183328518346731389Shigella flexneri 2a str. 2457T, complete genomenitrite extrusion protein 20825
NC_007946:1586656:1611399161139916127871389Escherichia coli UTI89, complete genomenitrite extrusion protein 20823
NC_011750:1809943:1817664181766418190521389Escherichia coli IAI39 chromosome, complete genomenitrate/nitrite transporter0823
NC_010498:1700447:1709920170992017113081389Escherichia coli SMS-3-5, complete genomenitrite extrusion protein 20822
NC_008563:1577879:1600317160031716017231407Escherichia coli APEC O1, complete genomenitrite extrusion protein 20821
NC_004431:1713141:1737453173745317388411389Escherichia coli CFT073, complete genomeNitrite extrusion protein 20821
NC_011751:1714131:1738299173829917396871389Escherichia coli UMN026 chromosome, complete genomenitrate/nitrite transporter0820
NC_013941:1857724:1866372186637218677601389Escherichia coli O55:H7 str. CB9615 chromosome, complete genomenitrite extrusion protein 20820
NC_002655:2015000:2025177202517720265651389Escherichia coli O157:H7 EDL933, complete genomenitrite extrusion protein 20819
NC_002695:2056545:2061908206190820632961389Escherichia coli O157:H7 str. Sakai, complete genomenitrite extrusion protein 20819
NC_011353:1971145:1976508197650819778961389Escherichia coli O157:H7 str. EC4115 chromosome, complete genomenitrite extrusion protein 20819
NC_013008:1971662:1975484197548419768721389Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenitrate/nitrite transporter0819
NC_016822:1818897:1829530182953018309181389Shigella sonnei 53G, complete genomenitrate/nitrite transport protein NarU0816
NC_007384:1737885:1751571175157117529321362Shigella sonnei Ss046, complete genomenitrite extrusion protein 20702
NC_014562:2563466:2568870256887025702941425Pantoea vagans C9-1 chromosome, complete genomeNitrate transporter6e-162570
NC_008321:2649781:2658257265825726596751419Shewanella sp. MR-4, complete genomenitrite transporter2e-152538
NC_008322:2716676:2726219272621927276371419Shewanella sp. MR-7, complete genomenitrite transporter2e-152538
NC_016614:1152500:1166905116690511682781374Vibrio sp. EJY3 chromosome 2, complete sequencenitrite extrusion protein2e-134479
NC_013508:275081:2803182803182817211404Edwardsiella tarda EIB202, complete genomenitrate/nitrite transporter6e-117421
NC_012779:261438:2651282651282665011374Edwardsiella ictaluri 93-146, complete genomenitrite extrusion protein 25e-114411
NC_014973:2945942:2948826294882629502111386Geobacter sp. M18 chromosome, complete genomenitrite transporter6e-99361
NC_014147:765941:7741417741417754871347Moraxella catarrhalis RH4 chromosome, complete genomenitrate transporter NarK15e-96352
NC_010814:190673:1929201929201942931374Geobacter lovleyi SZ, complete genomenitrite transporter2e-92340
NC_018750:3315309:3329954332995433313751422Streptomyces venezuelae ATCC 10712, complete genomeNitrate or nitrite transporter4e-87322
NC_015125:788931:8057548057548071421389Microbacterium testaceum StLB037, complete genomenitrate/nitrite transporter3e-72273
NC_013093:915248:9192549192549206061353Actinosynnema mirum DSM 43827, complete genomemajor facilitator superfamily MFS_12e-60233
NC_009953:188000:2038072038072052221416Salinispora arenicola CNS-205 chromosome, complete genomenitrate/nitrite transporter-like protein2e-43177
NC_013939:2117663:2125626212562621272271602Deferribacter desulfuricans SSM1, complete genomenitrate/nitrite extrusion protein5e-43175
NC_016783:429162:4329244329244342551332Corynebacterium diphtheriae INCA 402 chromosome, complete genomeputative nitrate transporter1e-39164
NC_010612:5236229:5239483523948352409521470Mycobacterium marinum M, complete genomenitrite extrusion protein, NarK3_39e-36151
NC_010612:5236229:5248292524829252497041413Mycobacterium marinum M, complete genomeintegral membrane nitrite extrusion protein NarK3_42e-35150
NC_020133:4841932:4843499484349948449681470Mycobacterium liflandii 128FXT, complete genomenitrite extrusion protein, NarK3_33e-35149
NC_020133:4841932:4849757484975748508331077Mycobacterium liflandii 128FXT, complete genome2e-1377.8
NC_014718:791528:7945907945907958581269Burkholderia rhizoxinica HKI 454 chromosome, complete genomeNitrate transporter3e-0963.5
NC_014098:1670327:1674824167482416760261203Bacillus tusciae DSM 2912 chromosome, complete genomemajor facilitator superfamily MFS_14e-0963.2
NC_013887:1383127:1386672138667213881171446Methanocaldococcus sp. FS406-22 chromosome, complete genomemajor facilitator superfamily MFS_14e-0860.1
NC_010609:1077453:1080419108041910816121194Lactobacillus reuteri JCM 1112, complete genomenitrite extrusion protein4e-0756.6
NC_020410:3547345:3553394355339435545841191Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completenitrite extrusion permease4e-0756.6
NC_009725:3559257:3559257355925735604471191Bacillus amyloliquefaciens FZB42, complete genomeNarK4e-0756.6
NC_019842:3594409:3594409359440935955991191Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,MFS transporter, NNP family, nitrate transporter4e-0756.6