Pre_GI: BLASTP Hits

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Query: NC_008258:1750964:1771126 Shigella flexneri 5 str. 8401, complete genome

Start: 1771126, End: 1772661, Length: 1536

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Shigella spp. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:1781644:1801998180199818035331536Shigella sonnei 53G, complete genomeglutamate/g-aminobutyrate antiporter0880
AP010958:1711656:1711656171165617131911536Escherichia coli O103:H2 str. 12009 DNA, complete genomepredicted glutamate:gamma-aminobutyric acid antiporter GadC0880
NC_010658:1593137:1593137159313715946721536Shigella boydii CDC 3083-94, complete genomeglutamate:gamma aminobutyrate antiporter0880
NC_009801:1678790:1678790167879016803251536Escherichia coli E24377A, complete genomeglutamate:gamma aminobutyrate antiporter0880
NC_004741:1792442:1809541180954118110761536Shigella flexneri 2a str. 2457T, complete genomeacid sensitivity protein, putative transporter0880
NC_007613:1533024:1556412155641215579471536Shigella boydii Sb227, complete genomeacid sensitivity protein, putative transporter0880
NC_013353:1711656:1711656171165617131911536Escherichia coli O103:H2 str. 12009, complete genomeglutamate:gamma-aminobutyric acid antiporter GadC0880
NC_013361:2047170:2047170204717020487051536Escherichia coli O26:H11 str. 11368 chromosome, complete genomeglutamate:gamma-aminobutyric acid antiporter GadC0880
NC_013364:1902761:1902761190276119042961536Escherichia coli O111:H- str. 11128, complete genomeputative glutamate:gamma-aminobutyric acid antiporter GadC0880
NC_013941:1894496:1894496189449618960311536Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeglutamate/gamma-aminobutyrate antiporter0880
NC_004431:1754627:1754627175462717561621536Escherichia coli CFT073, complete genomeAmino acid antiporter0878
NC_011353:2004800:2004800200480020063351536Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeglutamate:gamma aminobutyrate antiporter0878
NC_011740:1595381:1615255161525516167901536Escherichia fergusonii ATCC 35469, complete genomeglutamate:gamma-aminobutyric acid antiporter0856
NC_008497:79144:7992879928814331506Lactobacillus brevis ATCC 367, complete genomeGlutamate gamma-aminobutyrate antiporter3e-74280
NC_014106:54587:5458754587560291443Lactobacillus crispatus ST1, complete genomeGlutamate/gamma-aminobutyrate antiporter1e-62241
NC_005362:52848:6874268742703371596Lactobacillus johnsonii NCC 533, complete genomehypothetical protein5e-61235
NC_006814:51500:5256852568540251458Lactobacillus acidophilus NCFM, complete genomeglutamategamma-aminobutyrate antiporter3e-59229
NC_014507:2319842:2333086233308623345161431Methanoplanus petrolearius DSM 11571 chromosome, complete genomeamino acid permease-associated protein9e-48191
NC_014618:2423661:2444986244498624464371452Enterobacter cloacae SCF1 chromosome, complete genomeamino acid permease1e-46187
NC_008800:4013298:4030666403066640322221557Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative amino acid permease1e-43177
NC_015224:3892972:3907937390793739094931557Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative amino acid permease2e-40167
NC_010080:69000:703367033671160825Lactobacillus helveticus DPC 4571, complete genome4e-39162
NC_009614:4802000:4809599480959948111761578Bacteroides vulgatus ATCC 8482 chromosome, complete genomeglutamate/gamma-aminobutyrate anti-porter6e-36152
NC_017328:2586171:2595628259562825970881461Shigella flexneri 2002017 chromosome, complete genomeputative amino acid antiporter1e-35151
NC_004337:2548288:2557990255799025594501461Shigella flexneri 2a str. 301, complete genomeputative amino acid antiporter1e-35151
NC_008258:2542863:2552467255246725539271461Shigella flexneri 5 str. 8401, complete genomeputative amino acid antiporter1e-35151
NC_004741:2526421:2536123253612325375831461Shigella flexneri 2a str. 2457T, complete genomeputative amino acid antiporter1e-35151
NC_014507:2568933:2568933256893325703721440Methanoplanus petrolearius DSM 11571 chromosome, complete genomeamino acid permease-associated protein9e-35148
NC_009380:4944183:4952656495265649541431488Salinispora tropica CNB-440 chromosome, complete genomeamino acid permease-associated protein3e-31137
NC_002162:268049:2680492680492703282280Ureaplasma parvum serovar 3 str. ATCC 700970, complete genomeamino acid antiporter2e-1687.4
NC_015214:48999:500375003750462426Lactobacillus acidophilus 30SC chromosome, complete genomeglutamate/gamma-aminobutyrate antiporter5e-1686.3
NC_012563:2761570:2782140278214027835851446Clostridium botulinum A2 str. Kyoto, complete genomeamino acid permease family protein7e-1582.4
NC_010520:2668702:2670322267032226717671446Clostridium botulinum A3 str. Loch Maree, complete genomeamino acid permease family protein8e-1582.4
NC_010516:2594159:2595779259577925972241446Clostridium botulinum B1 str. Okra, complete genomeamino acid permease family protein9e-1582
NC_009699:2654672:2656302265630226577471446Clostridium botulinum F str. Langeland chromosome, complete genomeamino acid permease9e-1582
NC_017297:2635892:2656451265645126578961446Clostridium botulinum F str. 230613 chromosome, complete genomeamino acid permease family protein9e-1582
NC_009698:2450606:2452237245223724536821446Clostridium botulinum A str. Hall chromosome, complete genomeamino acid permease1e-1481.6
NC_009697:2478261:2479892247989224813371446Clostridium botulinum A str. ATCC 19397 chromosome, completeamino acid permease1e-1481.6
NC_009495:2606238:2607869260786926093141446Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeamino acid permease1e-1481.6
NC_012658:2641446:2663215266321526646601446Clostridium botulinum Ba4 str. 657 chromosome, complete genomeamino acid permease family protein3e-1480.5
NC_008262:1139500:1153130115313011545991470Clostridium perfringens SM101, complete genomeamino acid permease family protein5e-1273.2
NC_003366:1122654:1135498113549811369671470Clostridium perfringens str. 13, complete genomehypothetical protein9e-1272
NC_008261:1332864:1346362134636213478311470Clostridium perfringens ATCC 13124, complete genomeamino acid permease family protein4e-1169.7
NC_014158:1479313:1483296148329614847561461Tsukamurella paurometabola DSM 20162 chromosome, complete genomeamino acid permease-associated region5e-1066.2
NC_007645:6461267:6461267646126764627451479Hahella chejuensis KCTC 2396, complete genomeAmino acid transporters1e-0861.6
NC_016612:1840325:1865907186590718673881482Klebsiella oxytoca KCTC 1686 chromosome, complete genomeinner membrane transporter YjeM1e-0758.5
NC_015873:450593:4673144673144686961383Megasphaera elsdenii DSM 20460, complete genomeamino acid permease2e-0757.8
NC_014963:4091910:4091910409191040932201311Terriglobus saanensis SP1PR4 chromosome, complete genomeamino acid permease-associated region2e-0757.4
NC_009801:995396:9965629965629981841623Escherichia coli E24377A, complete genomeamino acid permease family protein4e-0757
NC_017986:3283433:3301949330194933033971449Pseudomonas putida ND6 chromosome, complete genomeethanolamine transporter4e-0756.6
NC_015759:760671:7772327772327785871356Weissella koreensis KACC 15510 chromosome, complete genomeamino acid transport protein7e-0755.8
NC_007296:1762000:1772812177281217741551344Streptococcus pyogenes MGAS6180, complete genomeamino acid permease9e-0755.5
NC_014328:2326930:2336082233608223374851404Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative aminoacid permease1e-0655.1
NC_011094:1050700:1059485105948510609061422Salmonella enterica subsp. enterica serovar Schwarzengrund strinner membrane transporter YcaM3e-0653.5