Pre_GI: BLASTN Hits

Some Help

Query: NC_008228:776000 Pseudoalteromonas atlantica T6c, complete genome

Start: 776000, End: 794364, Length: 18365

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009997:26996442699644272218322540Shewanella baltica OS195, complete genome1e-29139BLASTN svgBLASTP svg
NC_009997:23529482352948238309930152Shewanella baltica OS195, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_019940:36607543660754368438423631Thioflavicoccus mobilis 8321 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_019940:24850002485000250482819829Thioflavicoccus mobilis 8321 chromosome, complete genome2e-0971.9BLASTN svgBLASTP svg