Pre_GI: BLASTP Hits

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Query: NC_008228:4915500:4931760 Pseudoalteromonas atlantica T6c, complete genome

Start: 4931760, End: 4934045, Length: 2286

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016884:70955:8754687546897442199Sulfobacillus acidophilus DSM 10332 chromosome, complete genomehypothetical protein6e-47189
NC_015757:70790:8730687306895042199Sulfobacillus acidophilus TPY chromosome, complete genomesuperfamily I DNA/RNA helicase-like protein6e-47189
NC_010572:5445081:5480062548006254819871926Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative DNA helicase1e-31139
NC_013441:382597:3985343985344003451812Gordonia bronchialis DSM 43247, complete genomeSuperfamily I DNA and RNA helicase-like protein9e-29129
NC_011958:1031592:1044108104410810464832376Rhodobacter sphaeroides KD131 chromosome 2, complete genomehypothetical protein6e-23110
NC_020126:5558613:5576935557693555791452211Myxococcus stipitatus DSM 14675, complete genomeATP-dependent DNA helicase RecQ1e-22108
NC_015671:3211972:3248924324892432506601737Cellvibrio gilvus ATCC 13127 chromosome, complete genomeUvrD/REP helicase8e-1789.7
NC_007907:808893:8088938088938136954803Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-1583.6
NC_008463:2467219:2480409248040924855325124Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative DNA helicase1e-1172.4
NC_014394:1554373:1566790156679015719135124Gallionella capsiferriformans ES-2 chromosome, complete genomeATP-dependent DNA helicase, RecQ family3e-1067.4
NC_016940:995500:1003798100379810125908793Saprospira grandis str. Lewin chromosome, complete genomeATP-dependent DNA helicase, RecQ family protein1e-0862.4
NC_011830:3025437:3043677304367730478554179Desulfitobacterium hafniense DCB-2, complete genomerecombination helicase AddA5e-0860.5
NC_007907:1940000:1958144195814419623224179Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-0860.5
NC_009089:1202261:1227866122786612316933828Clostridium difficile 630, complete genomeATP-dependent nuclease subunit A8e-0859.7
NC_020291:1:2221022210259413732Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeATP-dependent helicase/nuclease subunit A6e-0757
NC_013316:1081044:1106579110657911104063828Clostridium difficile R20291, complete genomeATP-dependent nuclease subunit A6e-0756.6
NC_015425:369225:3726203726203763543735Clostridium botulinum BKT015925 chromosome, complete genomeATP-dependent nuclease subunit A8e-0756.2
NC_020063:1194000:1201945120194512071015157Enterobacteriaceae bacterium strain FGI 57, complete genomeATP-dependent DNA helicase, RecQ family1e-0655.5
NC_015977:2807782:2831058283105828339462889Roseburia hominis A2-183 chromosome, complete genomeSuperfamily I helicase domain and RecB family exonuclease domain containing protein2e-0655.5
NC_016012:16134:1613416134197183585Candidatus Arthromitus sp. SFB-rat-Yit, complete genomeATP-dependent deoxyribonuclease chain A3e-0654.7
NC_010718:3039434:3039434303943430416982265Natranaerobius thermophilus JW/NM-WN-LF, complete genomeUvrD/REP helicase4e-0654.3
NC_011147:1802535:1825018182501818270722055Salmonella enterica subsp. enterica serovar Paratyphi A strDNA helicase IV4e-0653.9
NC_006511:1808815:1829835182983518318892055Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChelicase IV (75 kD helicase)4e-0653.9
NC_017192:890718:9114729114729162804809Arcobacter sp. L, complete genomeATP-dependent DNA helicase4e-0653.9