Pre_GI: BLASTP Hits

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Query: NC_008228:4915500:4928538 Pseudoalteromonas atlantica T6c, complete genome

Start: 4928538, End: 4931753, Length: 3216

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008278:256427:2734192734192774414023Frankia alni ACN14a, complete genomeconserved hypothetical protein; putative superfamily II DNA and RNA helicase.1e-110401
NC_017167:407352:4247204247204273652646Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1DEAD/DEAH box helicase9e-0653.5
NC_014820:1618606:1629991162999116333533363Cenarchaeum symbiosum A, complete genomeDNA helicase1e-112408
NC_015684:362236:3768533768533799453093Oligotropha carboxidovorans OM5 chromosome, complete genomeDNA helicase1e-51205
NC_011958:1031592:1040920104092010440783159Rhodobacter sphaeroides KD131 chromosome 2, complete genomeDNA helicase1e-152541
NC_019964:3028469:3039365303936530430933729Halovivax ruber XH-70, complete genomeDNA/RNA helicase, superfamily II5e-57223
NC_018750:6237875:6237875623787562417353861Streptomyces venezuelae ATCC 10712, complete genomehelicase2e-117424
NC_011386:136223:1487641487641518563093Oligotropha carboxidovorans OM5, complete genomehelicase1e-51205
NC_012997:4545875:4578490457849045819393450Teredinibacter turnerae T7901, complete genomehelicase domain protein2e-130467
NC_008782:2326439:2333914233391423379334020Acidovorax sp. JS42, complete genomehelicase domain protein2e-128461
NC_013526:835117:8351178351178386383522Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomehelicase domain protein7e-126452
NC_011880:56543:5654356543605143972Cyanothece sp. PCC 7425 plasmid pP742501, complete sequencehelicase domain protein7e-124445
NC_014830:3387479:3401722340172234054203699Intrasporangium calvum DSM 43043 chromosome, complete genomehelicase domain protein4e-110399
NC_008578:2226778:2233717223371722372053489Acidothermus cellulolyticus 11B, complete genomehelicase domain protein1e-84315
NC_020388:1100759:1128502112850211321703669Natronomonas moolapensis 8.8.11 complete genomehelicase domain protein4e-54214
NC_014924:2399524:2416574241657424197023129Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomehelicase domain protein2e-124447
NC_014210:3248526:3260694326069432646383945Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,helicase domain protein3e-113410
NC_008554:4586543:4595769459576945993743606Syntrophobacter fumaroxidans MPOB, complete genomehelicase domain protein3e-60234
NC_014365:2843126:2864987286498728686973711Desulfarculus baarsii DSM 2075 chromosome, complete genomehelicase domain protein3e-127456
NC_014666:8488567:8502029850202985055203492Frankia sp. EuI1c chromosome, complete genomehelicase domain protein7e-114412
NC_013530:2492312:2513451251345125172093759Xylanimonas cellulosilytica DSM 15894, complete genomehelicase domain protein3e-105383
NC_014761:74500:8144581445853113867Oceanithermus profundus DSM 14977 chromosome, complete genomehelicase domain protein3e-63244
NC_014828:1335154:1391428139142813946133186Ethanoligenens harbinense YUAN-3 chromosome, complete genomehelicase domain protein4e-131469
NC_008554:4699577:4699577469957747034343858Syntrophobacter fumaroxidans MPOB, complete genomehelicase domain protein6e-130466
NC_013235:508585:5126255126255163053681Nakamurella multipartita DSM 44233, complete genomehelicase domain protein2e-125450
NC_008786:1298817:1313947131394713179123966Verminephrobacter eiseniae EF01-2, complete genomehelicase domain protein7e-123442
NC_008705:868623:9051039051039087653663Mycobacterium sp. KMS, complete genomehelicase domain protein8e-111402
NC_014721:2135500:2191913219191321958753963Caldicellulosiruptor kristjanssonii 177R1B chromosome, completehelicase domain protein1e-63245
NC_010571:1459363:1475557147555714791263570Opitutus terrae PB90-1, complete genomehelicase domain protein2e-40168
NC_020126:5558613:5573730557373055769303201Myxococcus stipitatus DSM 14675, complete genomehelicase domain-containing protein4e-164579
NC_017030:5558429:5598468559846856028294362Corallococcus coralloides DSM 2259 chromosome, complete genomehelicase domain-containing protein3e-33144
NC_015671:3211972:3245751324575132489273177Cellvibrio gilvus ATCC 13127 chromosome, complete genomehelicase domain-containing protein3e-141503
NC_020126:2979959:3006752300675230100903339Myxococcus stipitatus DSM 14675, complete genomehelicase domain-containing protein5e-126452
NC_018581:2768743:2811156281115628148393684Gordonia sp. KTR9 chromosome, complete genomehelicase domain-containing protein3e-98360
NC_016884:70955:8974689746928503105Sulfobacillus acidophilus DSM 10332 chromosome, complete genomehelicase domain-containing protein0688
NC_014391:1812500:1821464182146418246313168Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehelicase domain-containing protein5e-131469
NC_016114:1474000:1515352151535215189363585Streptomyces flavogriseus ATCC 33331 chromosome, complete genomehelicase domain-containing protein1e-55218
NC_017322:1260526:1279661127966112839924332Sinorhizobium meliloti BL225C chromosome, complete genomehelicase domain-containing protein2e-39165
NC_013521:345308:3628793628793666433765Sanguibacter keddieii DSM 10542, complete genomehelicase family protein1e-105385
NC_009076:3564500:3579691357969135836893999Burkholderia pseudomallei 1106a chromosome I, complete sequencehelicase, C-terminal5e-125449
NC_008060:3155133:3173885317388531780904206Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencehelicase-like2e-47191
NC_007796:1731500:1741178174117817444263249Methanospirillum hungatei JF-1, complete genomehelicase-like1e-50202
NC_007778:2875973:2892331289233128966054275Rhodopseudomonas palustris HaA2, complete genomeHelicase-like7e-35150
NC_015757:70790:8950689506926103105Sulfobacillus acidophilus TPY chromosome, complete genomehelicase-like protein0688
NC_008146:861319:8963748963749000363663Mycobacterium sp. MCS, complete genomehelicase-like protein8e-111402
NC_007645:5801295:5830096583009658332453150Hahella chejuensis KCTC 2396, complete genomehypothetical protein1e-136488
NC_017249:8483159:8504856850485685089084053Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-130468
NC_012731:600518:6381376381376421353999Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomehypothetical protein3e-129463
NC_009648:5119271:5151896515189651558943999Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein1e-129464
NC_012521:1:1438814388178793492Rhodococcus opacus B4 plasmid pROB02, complete sequencehypothetical protein3e-120433
NC_013665:1591081:1613908161390816182004293Methanocella paludicola SANAE, complete genomehypothetical protein5e-0964.3
NC_004463:925140:9322929322929358673576Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein4e-115416
NC_017082:3717939:372747337274733728258786Bradyrhizobium sp. S23321, complete genomehypothetical protein8e-29130
NC_008212:1295061:1312816131281613163283513Haloquadratum walsbyi DSM 16790, complete genomeprobable helicase family protein3e-54214
NC_010572:5445081:5476841547684154800653225Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative DNA helicase3e-141503
NC_006177:1422932:1443682144368214470443363Symbiobacterium thermophilum IAM 14863, complete genomeputative DNA helicase7e-151535
NC_014479:3939183:3952547395254739558883342Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeputative DNA helicase2e-127457
NC_017068:1143515:1160743116074311645343792Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative helicase7e-119429
NC_016048:2907702:2914572291457229182553684Oscillibacter valericigenes Sjm18-20, complete genomeputative helicase2e-139497
NC_016943:3352413:3360079336007933632643186Blastococcus saxobsidens DD2, complete genomeputative helicase family protein3e-132473
NC_006350:845513:8860798860798896393561Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative helicase family protein1e-137491
NC_003901:357394:3681153681153719423828Methanosarcina mazei Go1, complete genomesuperfamily II DNA/RNA helicase2e-56221