Pre_GI: BLASTP Hits

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Query: NC_008228:4915500:4924775 Pseudoalteromonas atlantica T6c, complete genome

Start: 4924775, End: 4926595, Length: 1821

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008260:1885969:1904538190453819064331896Alcanivorax borkumensis SK2, complete genomeHypotetical protein3e-1170.9
NC_016943:3352413:3363261336326133647541494Blastococcus saxobsidens DD2, complete genomeputative NERD domain protein4e-1790.5
NC_010622:249625:2709012709012726401740Burkholderia phymatum STM815 chromosome 1, complete sequenceNERD domain protein2e-24114
NC_014151:3687612:3692966369296636946331668Cellulomonas flavigena DSM 20109 chromosome, complete genomeNERD domain protein3e-1273.9
NC_013716:5201097:5253209525320952550231815Citrobacter rodentium ICC168, complete genomeputative DNA helicase7e-1272.8
CU928145:3360967:3398367339836734001541788Escherichia coli 55989 chromosome, complete genomeputative UvrD/REP helicase8e-1169.3
NC_011748:3360967:3398367339836734001541788Escherichia coli 55989, complete genomeputative UvrD/REP helicase8e-1169.3
NC_014666:8488567:8500332850033285020321701Frankia sp. EuI1c chromosome, complete genomeNERD domain protein2e-23111
NC_016906:181254:2298072298072314591653Gordonia polyisoprenivorans VH2 chromosome, complete genomenuclease-related domain-containing protein1e-1895.1
NC_014391:1812500:1824628182462818261481521Micromonospora aurantiaca ATCC 27029 chromosome, complete genomeNERD domain-containing protein5e-1376.6
NC_017955:4075804:4085074408507440867141641Modestobacter marinus, complete genomenuclease1e-1585.5
NC_008705:868623:9231419231419248321692Mycobacterium sp. KMS, complete genomeconserved hypothetical protein2e-20101
NC_008146:861319:9144129144129161031692Mycobacterium sp. MCS, complete genomehypothetical protein2e-20101
NC_015711:2050360:2064044206404420657621719Myxococcus fulvus HW-1 chromosome, complete genomehypothetical protein2e-28127
NC_020126:5558613:5570088557008855718271740Myxococcus stipitatus DSM 14675, complete genomehypothetical protein3e-59230
NC_016609:6750111:6766505676650567681961692Niastella koreensis GR20-10 chromosome, complete genomeNERD domain-containing protein8e-28125
NC_015684:362236:3735403735403751471608Oligotropha carboxidovorans OM5 chromosome, complete genomehypothetical protein8e-24112
NC_011386:136223:1535621535621551691608Oligotropha carboxidovorans OM5, complete genomenuclease-related domain family8e-24112
NC_008781:2883968:289717628971762898150975Polaromonas naphthalenivorans CJ2, complete genomehypothetical protein2e-1480.9
NC_011770:2499432:2515459251545925171831725Pseudomonas aeruginosa LESB58, complete genomehypothetical protein2e-25118
NC_014924:3334386:3341593334159333434701878Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeNERD domain protein2e-1068.2
NC_014924:2399524:2419707241970724213531647Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeNERD domain protein4e-1893.6
NC_011958:1031592:103742410374241038389966Rhodobacter sphaeroides KD131 chromosome 2, complete genomehypothetical protein1e-1792
NC_012521:1:1788417884195781695Rhodococcus opacus B4 plasmid pROB02, complete sequencehypothetical protein2e-25117
NC_008435:2368000:2394634239463423963551722Rhodopseudomonas palustris BisA53, complete genomehypothetical protein8e-26119
NC_011205:4761598:4772922477292247747631842Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853DNA helicase II5e-1376.6
NC_011294:4604283:4615608461560846174491842Salmonella enterica subsp. enterica serovar Enteritidis strtype I restriction enzyme2e-1377.8
NC_011274:4577402:4588873458887345907141842Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91type I restriction enzyme2e-1377.8
NC_016831:4556761:4568232456823245700731842Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative Type I restriction enzyme1e-1275.5
NC_017078:247045:2618732618732636031731Selenomonas ruminantium subsp. lactilytica TAM6421 plasmid pSRC1,hypothetical protein4e-31136
NC_017068:1401352:1436468143646814381351668Selenomonas ruminantium subsp. lactilytica TAM6421, completehypothetical protein5e-30133
NC_011662:317831:3199873199873216091623Thauera sp. MZ1T, complete genomeNERD domain protein2e-0654.7
NC_013526:567500:5709215709215726001680Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeNERD domain protein1e-1998.6