Pre_GI: BLASTP Hits

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Query: NC_008228:3608909:3611198 Pseudoalteromonas atlantica T6c, complete genome

Start: 3611198, End: 3611722, Length: 525

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014541:1280835:129770512977051298229525Ferrimonas balearica DSM 9799 chromosome, complete genomeouter membrane transport energization protein ExbB7e-78289
NC_011663:3181579:318386931838693184396528Shewanella baltica OS223 chromosome, complete genomeMotA/TolQ/ExbB proton channel6e-73272
NC_008321:2922000:292489129248912925418528Shewanella sp. MR-4, complete genomeMotA/TolQ/ExbB proton channel7e-73272
NC_009052:1899954:192182219218221922349528Shewanella baltica OS155, complete genomeMotA/TolQ/ExbB proton channel1e-72271
NC_008322:2983951:298871529887152989242528Shewanella sp. MR-7, complete genomeMotA/TolQ/ExbB proton channel2e-72270
NC_008577:3125675:312852931285293129056528Shewanella sp. ANA-3 chromosome 1, complete sequenceMotA/TolQ/ExbB proton channel2e-72270
NC_009092:2902171:291065929106592911186528Shewanella loihica PV-4, complete genomeMotA/TolQ/ExbB proton channel2e-71268
NC_014012:3356629:335766933576693358196528Shewanella violacea DSS12, complete genomeTonB system transport protein ExbB25e-71266
NC_014315:2659479:267873226787322679256525Nitrosococcus watsoni C-113 chromosome, complete genomeMotA/TolQ/ExbB proton channel1e-36152
NC_014012:3356629:3358196335819633595511356Shewanella violacea DSS12, complete genomeMotA/TolQ/ExbB proton channel family protein2e-1478.6
NC_009052:1899954:1920467192046719218221356Shewanella baltica OS155, complete genomeMotA/TolQ/ExbB proton channel2e-1478.6
NC_011663:3181579:3184396318439631857511356Shewanella baltica OS223 chromosome, complete genomeMotA/TolQ/ExbB proton channel2e-1478.6
NC_008321:2922000:2925418292541829267731356Shewanella sp. MR-4, complete genomeMotA/TolQ/ExbB proton channel4e-1477.4
NC_008577:3125675:3129056312905631304111356Shewanella sp. ANA-3 chromosome 1, complete sequenceMotA/TolQ/ExbB proton channel5e-1477
NC_008322:2983951:2989242298924229905971356Shewanella sp. MR-7, complete genomeMotA/TolQ/ExbB proton channel5e-1477
NC_009092:2902171:2911186291118629125411356Shewanella loihica PV-4, complete genomeMotA/TolQ/ExbB proton channel1e-1375.5
NC_020409:77414:796547965480286633Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeMotA/TolQ/ExbB proton channel2e-1168.6
NC_014541:1280835:1296344129634412977021359Ferrimonas balearica DSM 9799 chromosome, complete genomeouter membrane transport energization protein ExbB4e-1167.8
NC_006138:3355028:336241233624123362936525Desulfotalea psychrophila LSv54, complete genomesimilar to biopolymer transport protein (ExbB)8e-1166.6
NC_015276:2171355:217382821738282174442615Marinomonas mediterranea MMB-1 chromosome, complete genomeMotA/TolQ/ExbB proton channel8e-1166.6
NC_014315:2659479:2679240267924026806851446Nitrosococcus watsoni C-113 chromosome, complete genomeMotA/TolQ/ExbB proton channel3e-0961.2
NC_006138:3355028:3362945336294533643361392Desulfotalea psychrophila LSv54, complete genomesimilar to transport protein TolQ4e-0960.8
NC_020409:77414:8027380273817001428Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeMotA/TolQ/ExbB proton channel5e-0960.8
NC_012440:1874896:187489618748961875537642Persephonella marina EX-H1, complete genomeMotA/TolQ/ExbB proton channel family protein1e-0859.7
NC_013520:1936209:195397819539781954589612Veillonella parvula DSM 2008, complete genomeMotA/TolQ/ExbB proton channel1e-0859.7
NC_010581:561579:582756582756583496741Beijerinckia indica subsp. indica ATCC 9039, complete genomeMotA/TolQ/ExbB proton channel1e-0859.7
NC_015574:228948:241203241203242042840Methanobacterium sp. SWAN-1 chromosome, complete genomeMotA/TolQ/ExbB proton channel7e-0753.5
NC_014761:1321187:134194013419401342560621Oceanithermus profundus DSM 14977 chromosome, complete genomemota/tolq/exbb proton channel8e-0753.1
NC_002977:2407392:2429302242930224311251824Methylococcus capsulatus str. Bath, complete genomeMotA/TolQ/ExbB proton channel family domain protein1e-0652.8
NC_014008:354292:355368355368356129762Coraliomargarita akajimensis DSM 45221 chromosome, complete genomeMotA/TolQ/ExbB proton channel2e-0652
NC_011761:2031876:204920020492002049877678Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeMotA/TolQ/ExbB proton channel family protein2e-0651.6
NC_011206:1917408:193473219347321935409678Acidithiobacillus ferrooxidans ATCC 53993, complete genomeMotA/TolQ/ExbB proton channel2e-0651.6
NC_011761:684969:695389695389696093705Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeMotA/TolQ/ExbB proton channel family protein8e-0650.1
NC_011206:863987:874407874407875111705Acidithiobacillus ferrooxidans ATCC 53993, complete genomeMotA/TolQ/ExbB proton channel8e-0650.1
NC_013446:3209000:322514132251413225773633Comamonas testosteroni CNB-2, complete genomeMotA/TolQ/ExbB proton channel9e-0649.7