Pre_GI: BLASTP Hits

Some Help

Query: NC_008228:3608909:3608909 Pseudoalteromonas atlantica T6c, complete genome

Start: 3608909, End: 3610168, Length: 1260

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014541:1280835:1299277129927713005331257Ferrimonas balearica DSM 9799 chromosome, complete genomeTPR repeat protein1e-88327
NC_008321:2922000:2922598292259829238451248Shewanella sp. MR-4, complete genomeTPR repeat-containing protein3e-83308
NC_008322:2983951:2986422298642229876691248Shewanella sp. MR-7, complete genomeTPR repeat-containing protein3e-82305
NC_009092:2902171:2908372290837229096191248Shewanella loihica PV-4, complete genometetratricopeptide domain protein4e-82305
NC_008577:3125675:3126236312623631274831248Shewanella sp. ANA-3 chromosome 1, complete sequenceTPR repeat-containing protein5e-82305
NC_011663:3181579:3181579318157931828261248Shewanella baltica OS223 chromosome, complete genomehypothetical protein1e-79297
NC_014315:2659479:2676365267636526776391275Nitrosococcus watsoni C-113 chromosome, complete genomeTPR repeat-containing protein3e-23110
NC_010943:9294:92949294104811188Stenotrophomonas maltophilia K279a, complete genomeconserved hypothetical TPR repeat family protein3e-1170.1
NC_004556:1:90469046102391194Xylella fastidiosa Temecula1, complete genomehypothetical protein2e-0964.3
NC_010577:1:89378937101301194Xylella fastidiosa M23, complete genomeTetratricopeptide TPR_2 repeat protein2e-0964.3
NC_002488:1:90669066102591194Xylella fastidiosa 9a5c, complete genomehypothetical protein5e-0962.8
NC_012225:2834642:2844286284428628467392454Brachyspira hyodysenteriae WA1, complete genomeputative TPR domain-containing protein5e-0652.8