Pre_GI: BLASTP Hits

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Query: NC_008150:4634695:4643204 Yersinia pestis Antiqua, complete genome

Start: 4643204, End: 4643294, Length: 91

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from the Republic of Congo. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017160:4508000:45211994521199452128991Yersinia pestis D182038 chromosome, complete genometRNA-Sec3e-0960.8
NC_010465:62348:69449694496953991Yersinia pseudotuberculosis YPIII, complete genometRNA-Sec3e-0960.8
NC_008800:4488112:45041824504182450427291Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,tRNA-Sec9e-0958.9
NC_004337:3590323:38064043806404380649491Shigella flexneri 2a str. 301, complete genometRNA-Sec6e-0752.8
NC_003198:3881221:39004633900463390055391Salmonella enterica subsp. enterica serovar Typhi str. CT18,tRNA-Pro6e-0752.8
NC_010468:49074:55461554615555191Escherichia coli ATCC 8739, complete genometRNA-Sec6e-0752.8
NC_013716:4306695:43841984384198438428891Citrobacter rodentium ICC168, complete genometRNA-Sec6e-0752.8
NC_015567:69190:75534755347562491Serratia sp. AS9 chromosome, complete genometRNA-Sec6e-0752.8
NC_015566:69190:75534755347562491Serratia sp. AS12 chromosome, complete genometRNA-Sec6e-0752.8
NC_009832:110239:11620711620711629791Serratia proteamaculans 568, complete genometRNA-Sec6e-0752.8
NC_016860:3964000:39714723971472397156695Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Sec7e-0752.8
NC_010498:4072681:40813404081340408143495Escherichia coli SMS-3-5, complete genometRNA-Sec7e-0752.8
NC_011149:3863913:38679133867913386800795Salmonella enterica subsp. enterica serovar Agona str. SL483,tRNA-Sec7e-0752.8
CP002516:44744:63205632056329591Escherichia coli KO11, complete genometRNA-Sec6e-0752.8
NC_011751:4293966:42968054296805429689591Escherichia coli UMN026 chromosome, complete genometRNA-Sec6e-0752.8
NC_016902:44744:63205632056329591Escherichia coli KO11FL chromosome, complete genometRNA-Sec6e-0752.8
NC_016863:3905875:39098753909875390996591Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1tRNA-OTHER6e-0752.8
NC_014618:57707:79625796257971591Enterobacter cloacae SCF1 chromosome, complete genometRNA-Sec6e-0752.8
NC_013361:4959323:49665794966579496666991Escherichia coli O26:H11 str. 11368 chromosome, complete genometRNA-Sec6e-0752.8
NC_012967:3769499:37752643775264377535491Escherichia coli B str. REL606 chromosome, complete genometRNA-Sec6e-0752.8
NC_012125:3879917:38857293885729388581991Salmonella enterica subsp. enterica serovar Paratyphi C straintRNA-Sec6e-0752.8
NC_011601:4096427:41022784102278410236891Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometRNA-OTHER6e-0752.8
NC_004431:4270305:42743084274308427439891Escherichia coli CFT073, complete genometRNA-Sec6e-0752.8
NC_008253:3941938:39477893947789394787991Escherichia coli 536, complete genometRNA-Sec6e-0752.8
CP002185:4035502:40427784042778404286891Escherichia coli W, complete genometRNA-Sec6e-0752.8
NC_020064:79422:84931849318502191Serratia marcescens FGI94, complete genometRNA-Sec9e-0752.4
NC_014837:33014:50044500445013491Pantoea sp. At-9b chromosome, complete genometRNA-Sec4e-0650.1
NC_015968:74124:86830868308692091Enterobacter asburiae LF7a chromosome, complete genometRNA-Sec6e-0649.7
NC_015663:1356982:13633331363333136342795Enterobacter aerogenes KCTC 2190 chromosome, complete genometRNA-Sec6e-0649.7