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Query: NC_008150:2173708:2194726 Yersinia pestis Antiqua, complete genome

Start: 2194726, End: 2196072, Length: 1347

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from the Republic of Congo. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017168:2999514:2998171299817129995171347Yersinia pestis A1122 chromosome, complete genomehypothetical protein0929
NC_005810:2508671:2532840253284025341861347Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein0929
NC_003143:2741478:2762916276291627642621347Yersinia pestis CO92, complete genomehypothetical protein0929
NC_013421:4006085:4022022402202240233561335Pectobacterium wasabiae WPP163, complete genomeCRISPR-associated protein, Csy1 family3e-113408
NC_016818:1963875:1967137196713719684711335Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeCRISPR type I-F/YPEST-associated protein Csy14e-101368
NC_014216:1787000:1794641179464117960141374Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomeCRISPR-associated protein, Csy1 family2e-91336
NC_009665:3869904:3868552386855238699131362Shewanella baltica OS185 chromosome, complete genomeCRISPR-associated Csy1 family protein1e-80300
NC_016901:3936944:3935592393559239369531362Shewanella baltica OS678 chromosome, complete genomeCRISPR-associated protein, Csy1 family1e-80300
NC_009997:3988980:3987628398762839889891362Shewanella baltica OS195, complete genomeCRISPR-associated protein, Csy1 family1e-80300
NC_014836:993448:1001285100128510024481164Desulfurispirillum indicum S5 chromosome, complete genomeCsy1 family CRISPR-associated protein4e-63242
NC_012796:4693500:4729304472930447306681365Desulfovibrio magneticus RS-1, complete genomehypothetical protein3e-53209
NC_014532:110875:1226311226311240071377Halomonas elongata DSM 2581, complete genomeCRISPR-associated protein, Csy1 family1e-52207
NC_013889:2561381:2571311257131125725851275Thioalkalivibrio sp. K90mix chromosome, complete genomeCRISPR-associated protein, Csy1 family1e-51204
NC_018145:683874:6963316963316976411311Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completeCRISPR-associated protein, Csy1 family9e-46184
NC_017098:477000:4866084866084878611254Spirochaeta africana DSM 8902 chromosome, complete genomeCRISPR type I-F/YPEST-associated protein Csy17e-25115
NC_015436:1322087:1324604132460413258061203Spirochaeta coccoides DSM 17374 chromosome, complete genomeCRISPR-associated protein, Csy1 family8e-24112
NC_009446:174951:1749511749511762461296Dichelobacter nodosus VCS1703A, complete genomehypothetical protein2e-22107
NC_015873:1933036:1946550194655019477011152Megasphaera elsdenii DSM 20460, complete genomeCRISPR-associated protein1e-1997.8
NC_020418:3022891:303087630308763031601726Morganella morganii subsp. morganii KT, complete genomeCRISPR-associated protein, Csy1 family2e-1170.9