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Query: NC_008150:2173708:2192757 Yersinia pestis Antiqua, complete genome

Start: 2192757, End: 2193761, Length: 1005

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from the Republic of Congo. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017168:2999514:3000482300048230014861005Yersinia pestis A1122 chromosome, complete genomehypothetical protein0691
NC_004088:1909880:1909880190988019108841005Yersinia pestis KIM, complete genomehypothetical protein0691
NC_005810:2508671:2530871253087125318751005Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein0691
NC_003143:2741478:2760947276094727619511005Yersinia pestis CO92, complete genomehypothetical protein0691
NC_013421:4006085:4020066402006640210791014Pectobacterium wasabiae WPP163, complete genomeCRISPR-associated protein, Csy3 family2e-147522
NC_016818:1963875:1969444196944419704631020Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeCRISPR type I-F/YPEST-associated protein Csy37e-147520
NC_014216:1787000:1792650179265017936691020Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomeCRISPR-associated protein, Csy3 family3e-125448
NC_014836:993448:997775997775998773999Desulfurispirillum indicum S5 chromosome, complete genomeCsy3 family CRISPR-associated protein6e-124444
NC_013889:2561381:2573563257356325746031041Thioalkalivibrio sp. K90mix chromosome, complete genomeCRISPR-associated protein, Csy3 family9e-111400
NC_014532:110875:1249771249771260081032Halomonas elongata DSM 2581, complete genomehypothetical protein1e-109396
NC_012796:4693500:4727279472727947283041026Desulfovibrio magneticus RS-1, complete genomehypothetical protein1e-107389
NC_018145:683874:6942176942176952571041Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completeCRISPR-associated protein, Csy3 family5e-105380
NC_015873:1933036:1944629194462919456511023Megasphaera elsdenii DSM 20460, complete genomeCRISPR-associated protein2e-98359
NC_009446:174951:1772091772091782191011Dichelobacter nodosus VCS1703A, complete genomehypothetical protein5e-95347
NC_017098:477000:4887584887584897891032Spirochaeta africana DSM 8902 chromosome, complete genomeCRISPR type I-F/YPEST-associated protein Csy32e-89329
NC_015436:1322087:1322678132267813237121035Spirochaeta coccoides DSM 17374 chromosome, complete genomeCRISPR-associated protein, Csy3 family3e-86318
NC_020418:3022891:302903530290353029817783Morganella morganii subsp. morganii KT, complete genomeCRISPR-associated protein, Csy3 family3e-47189
NC_008577:4611431:4627192462719246282411050Shewanella sp. ANA-3 chromosome 1, complete sequenceCRISPR-associated protein, Csy3 family4e-1892.4
NC_011566:1016858:1018973101897310200851113Shewanella piezotolerans WP3, complete genomehypothetical protein8e-1684.7