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Query: NC_008150:2173708:2192192 Yersinia pestis Antiqua, complete genome

Start: 2192192, End: 2192746, Length: 555

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from the Republic of Congo. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017168:2999514:300149730014973002051555Yersinia pestis A1122 chromosome, complete genomehypothetical protein3e-104377
NC_003143:2741478:276038227603822760936555Yersinia pestis CO92, complete genomehypothetical protein3e-104377
NC_004088:1909880:191089519108951911449555Yersinia pestis KIM, complete genomehypothetical protein3e-104377
NC_005810:2508671:253030625303062530860555Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein3e-104377
NC_013421:4006085:401950240195024020056555Pectobacterium wasabiae WPP163, complete genomeCRISPR-associated protein, Csy4 family3e-61234
NC_014216:1787000:179208417920841792650567Desulfurivibrio alkaliphilus AHT2 chromosome, complete genomeCRISPR-associated protein, Csy4 family2e-49194
NC_016818:1963875:197047319704731971027555Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeCRISPR-associated protein Cas6/Csy4, subtype I-F/YPEST2e-49194
NC_014836:993448:997216997216997764549Desulfurispirillum indicum S5 chromosome, complete genomeCsy4 family CRISPR-associated protein5e-41167
NC_012796:4693500:472671347267134727276564Desulfovibrio magneticus RS-1, complete genomehypothetical protein6e-40163
NC_013889:2561381:257460725746072575167561Thioalkalivibrio sp. K90mix chromosome, complete genomeCRISPR-associated protein, Csy4 family2e-39161
NC_018145:683874:693646693646694227582Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completeCRISPR-associated protein, Csy4 family7e-30130
NC_009438:2058566:207600820760082076559552Shewanella putrefaciens CN-32 chromosome, complete genomeCRISPR-associated Csy4 family protein1e-25115
NC_015873:1933036:194406619440661944632567Megasphaera elsdenii DSM 20460, complete genomeCRISPR-associated protein7e-1787
NC_015436:1322087:132208713220871322668582Spirochaeta coccoides DSM 17374 chromosome, complete genomeCRISPR-associated protein, Csy4 family1e-1479.3
NC_009446:174951:178247178247178855609Dichelobacter nodosus VCS1703A, complete genomehypothetical protein7e-1373.6
NC_017098:477000:489796489796490377582Spirochaeta africana DSM 8902 chromosome, complete genomeCRISPR-associated protein Cas6/Csy4, subtype I-F/YPEST2e-0755.1