Pre_GI: BLASTP Hits

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Query: NC_008150:1384102:1391586 Yersinia pestis Antiqua, complete genome

Start: 1391586, End: 1391661, Length: 76

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from the Republic of Congo. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017168:3535786:35524313552431355250676Yersinia pestis A1122 chromosome, complete genometRNA-Lys3e-0650.4
NC_013421:1696746:17228081722808172288376Pectobacterium wasabiae WPP163, complete genometRNA-Lys3e-0650.4
NC_006155:2084669:20901332090133209020876Yersinia pseudotuberculosis IP 32953, complete genometRNA-Lys3e-0650.4
NC_003143:2101902:21085072108507210858276Yersinia pestis CO92, complete genometRNA-Lys3e-0650.4
NC_005810:1663672:16807191680719168079476Yersinia pestis biovar Microtus str. 91001, complete genometRNA-Lys3e-0650.4
NC_010465:2582080:25938202593820259389576Yersinia pseudotuberculosis YPIII, complete genometRNA-Lys3e-0650.4
NC_015224:2061951:20677122067712206778776Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,tRNA-Lys3e-0650.4
NC_008800:2127918:21332602133260213333576Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,tRNA-Lys3e-0650.4
NC_009381:1414985:14276031427603142767876Yersinia pestis Pestoides F chromosome, complete genometRNA-Lys3e-0650.4
NC_014029:2388500:24014822401482240155776Yersinia pestis Z176003 chromosome, complete genometRNA-Lys3e-0650.4
NC_017154:2100587:21080492108049210812476Yersinia pestis D106004 chromosome, complete genometRNA-Lys3e-0650.4
NC_017160:2414000:24304882430488243056376Yersinia pestis D182038 chromosome, complete genometRNA-Lys3e-0650.4
NC_009648:838000:83902183902183909676Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometRNA-Lys6e-0649.7
NC_006370:768745:78131978131978139476Photobacterium profundum SS9 chromosome 1, complete sequencetRNA-Lys6e-0649.7
NC_006905:848000:84829884829884837376Salmonella enterica subsp. enterica serovar Choleraesuis strtRNA-Lys6e-0649.7
NC_006905:848000:84850884850884858376Salmonella enterica subsp. enterica serovar Choleraesuis strtRNA-Lys6e-0649.7
NC_010694:2565580:25900612590061259013676Erwinia tasmaniensis, complete genometRNA-Lys6e-0649.7
NC_011184:2723000:27324632732463273253876Vibrio fischeri MJ11 chromosome I, complete sequencetRNA-Lys6e-0649.7
NC_009648:838000:83881283881283888776Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometRNA-Lys6e-0649.7
NC_013961:1246454:12465341246534124660976Erwinia amylovora, complete genometRNA-Lys6e-0649.7
NC_012214:2673058:26968092696809269688476Erwinia pyrifoliae Ep1/96, complete genometRNA-Lys6e-0649.7
NC_009648:838000:83859083859083866576Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometRNA-Lys6e-0649.7
NC_010694:2565580:25908662590866259094176Erwinia tasmaniensis, complete genometRNA-Lys6e-0649.7
NC_009648:838000:83828683828683836176Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometRNA-Lys6e-0649.7
NC_010694:2565580:25904632590463259053876Erwinia tasmaniensis, complete genometRNA-Lys6e-0649.7
NC_013457:979102:98806598806598814076Vibrio sp. Ex25 chromosome 2, complete genometRNA-Lys6e-0649.7
NC_010694:2565580:25912382591238259131376Erwinia tasmaniensis, complete genometRNA-Lys6e-0649.7
NC_009648:838000:83800783800783808276Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genometRNA-Lys6e-0649.7
NC_011186:515214:52528252528252535776Vibrio fischeri MJ11 chromosome II, complete sequencetRNA-Lys6e-0649.7
NC_012214:2673058:26970422697042269711776Erwinia pyrifoliae Ep1/96, complete genometRNA-Lys6e-0649.7
NC_006905:848000:84808384808384815876Salmonella enterica subsp. enterica serovar Choleraesuis strtRNA-Lys6e-0649.7
NC_016860:857500:85801985801985809476Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Lys6e-0649.7
NC_016860:857500:85789485789485796976Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Lys6e-0649.7
NC_016860:857500:85760885760885768376Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Lys6e-0649.7
NC_016856:819482:81989681989681997176Salmonella enterica subsp. enterica serovar Typhimurium str. 14028StRNA-Lys6e-0649.7
NC_016856:819482:81968681968681976176Salmonella enterica subsp. enterica serovar Typhimurium str. 14028StRNA-Lys6e-0649.7
NC_016856:819482:81956181956181963676Salmonella enterica subsp. enterica serovar Typhimurium str. 14028StRNA-Lys6e-0649.7
NC_012125:793812:79706379706379713876Salmonella enterica subsp. enterica serovar Paratyphi C straintRNA-Lys6e-0649.7
NC_012125:793812:79685379685379692876Salmonella enterica subsp. enterica serovar Paratyphi C straintRNA-Lys6e-0649.7
NC_012125:793812:79663879663879671376Salmonella enterica subsp. enterica serovar Paratyphi C straintRNA-Lys6e-0649.7
NC_011083:862901:86763886763886771376Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,tRNA-Lys6e-0649.7
NC_011080:819103:82351082351082358576Salmonella enterica subsp. enterica serovar Newport str. SL254,tRNA-Lys6e-0649.7
NC_011080:819103:82397082397082404576Salmonella enterica subsp. enterica serovar Newport str. SL254,tRNA-Lys6e-0649.7
NC_012214:2673058:26972762697276269735176Erwinia pyrifoliae Ep1/96, complete genometRNA-Lys6e-0649.7
NC_011083:862901:86730386730386737876Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,tRNA-Lys6e-0649.7
NC_011149:779903:78343978343978351476Salmonella enterica subsp. enterica serovar Agona str. SL483,tRNA-Lys6e-0649.7
NC_011184:2840713:28522722852272285234776Vibrio fischeri MJ11 chromosome I, complete sequencetRNA-Lys6e-0649.7
NC_016860:857500:85822985822985830476Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Lys6e-0649.7