Some Help

Query: NC_008149:1221637 Yersinia pestis Nepal516, complete genome

Start: 1221637, End: 1243315, Length: 21679

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from Nepal. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003143:28956172895617291809922483Yersinia pestis CO92, complete genome038230BLASTN svgBLASTP svg
NC_004088:12917541291754131420722454Yersinia pestis KIM, complete genome038120BLASTN svgBLASTP svg
NC_008150:27858302785830280809922270Yersinia pestis Antiqua, complete genome016650BLASTN svgBLASTP svg
NC_015224:14402831440283145849618214Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,2e-139504BLASTN svgBLASTP svg
NC_020064:1150982*1150982117040619425Serratia marcescens FGI94, complete genome4e-82313BLASTN svgBLASTP svg
NC_012779:20645822064582209112726546Edwardsiella ictaluri 93-146, complete genome2e-74287BLASTN svgBLASTP svg
NC_013421:32376333237633325919921567Pectobacterium wasabiae WPP163, complete genome8e-59236BLASTN svgBLASTP svg
NC_009832:42698044269804429650026697Serratia proteamaculans 568, complete genome6e-41176BLASTN svgBLASTP svg
NC_008513:343540*34354036517621637Buchnera aphidicola str. Cc (Cinara cedri), complete genome1e-1489.7BLASTN svgBLASTP svg
NC_004545:499709*49970952921829510Buchnera aphidicola str. Bp (Baizongia pistaciae), complete genome7e-1383.8BLASTN svgBLASTP svg
NC_013592:80428880428883459430307Dickeya dadantii Ech586, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_021150:13220001322000135715735158Azotobacter vinelandii CA6, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_012560:13220001322000135714535146Azotobacter vinelandii DJ, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_008595:25466962546696258480338108Mycobacterium avium 104, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_002755:83139783139785005418658Mycobacterium tuberculosis CDC1551, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_002945:83102983102985365622628Mycobacterium bovis AF2122/97, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008769:86067086067087969619027Mycobacterium bovis BCG str. Pasteur 1173P2, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009525:83051383051384921918707Mycobacterium tuberculosis H37Ra, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009565:83307683307685178218707Mycobacterium tuberculosis F11, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012207:83103083103085360922580Mycobacterium bovis BCG str. Tokyo 172, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012214:12126161212616123625023635Erwinia pyrifoliae Ep1/96, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_013421:3117639*3117639314038322745Pectobacterium wasabiae WPP163, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014306:3006028*3006028304213136104Erwinia billingiae Eb661, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015633:17020001702000172537323374Vibrio anguillarum 775 chromosome chromosome I, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_009648:2465613*2465613249720831596Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014837:2758239*2758239277859920361Pantoea sp. At-9b chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015556:819503*81950384290123399Pseudomonas fulva 12-X chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013956:19949701994970201970624737Pantoea ananatis LMG 20103 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014121:31889283188928321328724360Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete3e-0661.9BLASTN svgBLASTP svg
NC_013282:37811493781149380484323695Cronobacter turicensis, complete genome3e-0661.9BLASTN svgBLASTP svg