Pre_GI: BLASTP Hits

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Query: NC_008149:3251196:3274713 Yersinia pestis Nepal516, complete genome

Start: 3274713, End: 3275177, Length: 465

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from Nepal. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009381:1783886:182737918273791827843465Yersinia pestis Pestoides F chromosome, complete genomeribonuclease H4e-89326
NC_004088:3382148:340564634056463406110465Yersinia pestis KIM, complete genomeribonuclease H4e-89326
NC_016902:3863932:387520938752093875676468Escherichia coli KO11FL chromosome, complete genomeRibonuclease H4e-73273
NC_016822:246715:248223248223248690468Shigella sonnei 53G, complete genomeribonuclease H4e-73273
CP002516:3863932:387520938752093875676468Escherichia coli KO11, complete genomeRibonuclease H4e-73273
CP002185:234719:236227236227236694468Escherichia coli W, complete genomeribonuclease HI, degrades RNA of DNA-RNA hybrids4e-73273
NC_011149:309556:312504312504312971468Salmonella enterica subsp. enterica serovar Agona str. SL483,ribonuclease HI4e-72270
NC_008577:2818546:284481028448102845286477Shewanella sp. ANA-3 chromosome 1, complete sequenceribonuclease H7e-60229
NC_009901:2915939:293221229322122932769558Shewanella pealeana ATCC 700345, complete genomeRibonuclease H1e-58225
NC_008322:2637646:265481226548122655288477Shewanella sp. MR-7, complete genomeribonuclease H1e-58224
NC_008321:2569315:258646925864692586945477Shewanella sp. MR-4, complete genomeribonuclease H4e-58223
NC_004347:2668000:269017526901752690651477Shewanella oneidensis MR-1, complete genomeribonuclease HI7e-58222
NC_015738:978794:104703510470351047529495Eggerthella sp. YY7918, complete genomehypothetical protein7e-49192
NC_014722:771483:790107790107790556450Burkholderia rhizoxinica HKI 454, complete genomeribonuclease HI2e-48191
NC_007508:1221500:122480012248001225252453Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomeribonuclease H4e-47186
NC_005085:1269787:132167413216741322117444Chromobacterium violaceum ATCC 12472, complete genomeribonuclease H9e-47185
NC_014210:2372813:238997223899722390454483Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,ribonuclease H8e-47185
NC_015731:1731896:174266317426631743127465Nitrosomonas sp. Is79A3 chromosome, complete genomeRibonuclease H1e-46184
NC_015856:1733500:173704417370441737478435Collimonas fungivorans Ter331 chromosome, complete genomeribonuclease HI3e-46183
NC_016838:85487:103228103228103896669Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS1,putative ribonuclease H4e-46183
NC_014910:1765065:179035317903531790799447Alicycliphilus denitrificans BC chromosome, complete genomeribonuclease h8e-46182
NC_010524:2117347:213815921381592138641483Leptothrix cholodnii SP-6, complete genomeribonuclease H4e-45180
NC_010531:708049:723840723840724304465Polynucleobacter necessarius STIR1, complete genomeribonuclease H1e-43174
NC_017518:1701958:170195817019581702395438Neisseria meningitidis NZ-05/33 chromosome, complete genomeribonuclease HI4e-43173
NC_008313:2685531:268722326872232687660438Ralstonia eutropha H16 chromosome 1, complete sequenceRibonuclease HI1e-42172
NC_014960:1735786:176591417659141766435522Anaerolinea thermophila UNI-1, complete genomeribonuclease H5e-41166
NC_008702:815264:826594826594827043450Azoarcus sp. BH72, complete genomeRnhA1 protein6e-40162
NC_012440:373863:382130382130382567438Persephonella marina EX-H1, complete genomeribonuclease HI6e-39159
NC_013173:302375:314342314342314818477Desulfomicrobium baculatum DSM 4028, complete genomeRibonuclease H1e-38158
NC_008601:1151653:115122011512201151678459Francisella tularensis subsp. novicida U112, complete genomeribonuclease H2e-38157
NC_010677:707881:730309730309730767459Francisella tularensis subsp. mediasiatica FSC147, complete genomeRibonuclease H2e-38157
NC_010981:242500:283821283821284354534Wolbachia pipientis, complete genomeribonuclease h6e-38156
NC_007797:107950:114020114020114472453Anaplasma phagocytophilum HZ, complete genomeribonuclease H11e-36152
NC_011757:4293000:430359543035954304056462Methylobacterium chloromethanicum CM4, complete genomeRibonuclease H6e-35145
NC_011146:896000:9102609102609116841425Geobacter bemidjiensis Bem, complete genomeribonuclease H5e-33139
NC_011899:948790:966757966757967566810Halothermothrix orenii H 168, complete genomeRibonuclease H1e-32138
NC_015682:1457004:1462429146242914635501122Thermodesulfobacterium sp. OPB45 chromosome, complete genomeRibonuclease H2e-32137
NC_007644:626992:643380643380643838459Moorella thermoacetica ATCC 39073, complete genomeRibonuclease H2e-32137
NC_009939:16437:181381813818617480Deinococcus geothermalis DSM 11300 plasmid pDGEO02, completeribonuclease H7e-32135
NC_017098:652681:675999675999676445447Spirochaeta africana DSM 8902 chromosome, complete genomeribonuclease HI2e-31134
NC_014484:591291:606079606079606510432Spirochaeta thermophila DSM 6192 chromosome, complete genomeribonuclease HI2e-31134
NC_009697:419443:437417437417437866450Clostridium botulinum A str. ATCC 19397 chromosome, completeribonuclease H3e-31134
NC_008609:975867:9943869943869958341449Pelobacter propionicus DSM 2379, complete genomeribonuclease H6e-31132
NC_014654:1802007:180350918035091804333825Halanaerobium sp. 'sapolanicus' chromosome, complete genomealkylhydroperoxidase like protein, AhpD family2e-30130
NC_018870:2479114:249062624906262491057432Thermacetogenium phaeum DSM 12270 chromosome, complete genomeribonuclease H3e-30130
NC_010718:1229355:124180512418051242263459Natranaerobius thermophilus JW/NM-WN-LF, complete genomeRNase HI5e-30129
NC_010172:480000:527114527114527545432Methylobacterium extorquens PA1, complete genomeribonuclease H2e-29127
NC_015500:900807:9278579278579294581602Treponema brennaborense DSM 12168 chromosome, complete genomeRibonuclease H8e-29125
NC_013009:562470:601918601918602373456Neorickettsia risticii str. Illinois, complete genomeRNase H1e-28125
NC_009720:1248866:127155212715521272289738Xanthobacter autotrophicus Py2, complete genomeribonuclease H1e-28125
NC_011126:555483:591507591507591968462Hydrogenobaculum sp. Y04AAS1, complete genomeRibonuclease H1e-25115
NC_011891:2088134:211092421109242111475552Anaeromyxobacter dehalogenans 2CP-1, complete genomeribonuclease H9e-25112
NC_009439:4661102:466784046678404668328489Pseudomonas mendocina ymp, complete genomeribonuclease H1e-23108
NC_012587:1181004:119138711913871192223837Rhizobium sp. NGR234, complete genomeputative ribonuclease HI4e-23106
NC_009937:1733196:174277817427781743338561Azorhizobium caulinodans ORS 571, complete genomeribonuclease H2e-22104
NC_014643:609544:6117676117676130891323Rothia dentocariosa ATCC 17931 chromosome, complete genomeribonuclease HI6e-2199.8
NC_010407:151599:151599151599152354756Clavibacter michiganensis subsp. sepedonicus chromosome, completeribonuclease H8e-2095.9
NC_014923:3968000:397125539712553972085831Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeRibonuclease H2e-1994.7
NC_011737:65712:7081870818792358418Cyanothece sp. PCC 7424 plasmid pP742402, complete sequenceribonuclease H3e-1787.8
NC_007677:1354500:139773513977351398658924Salinibacter ruber DSM 13855, complete genomeribonuclease H1e-1478.6
NC_018678:1820390:183180018318001832270471Alteromonas macleodii str. 'English Channel 673' chromosome,ribonuclease HI7e-1372.8
NC_016944:514742:530692530692531132441Vibrio cholerae IEC224 chromosome I, complete sequenceribonuclease H4e-1167
NC_012668:83641:892158921589655441Vibrio cholerae MJ-1236 chromosome 1, complete sequenceribonuclease H4e-1167
NC_002505:514732:530684530684531124441Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completeribonuclease H4e-1167
NC_005139:796546:810680810680811216537Vibrio vulnificus YJ016 chromosome I, complete sequenceribonuclease H1e-0755.8
NC_005139:2201820:227454722745472275083537Vibrio vulnificus YJ016 chromosome I, complete sequenceribonuclease H3e-0753.9