Pre_GI: BLASTP Hits

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Query: NC_008149:3251196:3256029 Yersinia pestis Nepal516, complete genome

Start: 3256029, End: 3256370, Length: 342

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from Nepal. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005061:594500:609173609173609520348Candidatus Blochmannia floridanus, complete genomesmall membrane protein A6e-0649.7
NC_014909:619407:622060622060622458399Candidatus Blochmannia vafer str. BVAF chromosome, complete genomeSmall protein A4e-0960.1
NC_009792:3665369:367101036710103671354345Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein3e-42170
NC_012880:3748665:377271837727183773056339Dickeya dadantii Ech703, complete genomeSmpA/OmlA domain protein2e-39160
NC_012912:3749156:375423337542333754577345Dickeya zeae Ech1591, complete genomeSmpA/OmlA domain protein6e-39159
NC_012779:2957000:296059529605952960945351Edwardsiella ictaluri 93-146, complete genomeSmpA/OmlA domain protein5e-41166
NC_013508:2870954:287558828755882875938351Edwardsiella tarda EIB202, complete genomeSmpA/OmlA domain protein7e-41165
NC_016514:3573400:357817335781733578511339Enterobacter cloacae EcWSU1 chromosome, complete genomeSmall protein A5e-43172
NC_014121:4043198:404890240489024049240339Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative SmpA/OmlA family lipoprotein9e-44175
NC_009436:3367194:337288133728813373222342Enterobacter sp. 638, complete genomehypothetical protein1e-43174
NC_004547:913553:928951928951929286336Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative outer membrane lipopotein (small protein A)1e-42171
NC_012214:1117325:113315011331501133497348Erwinia pyrifoliae Ep1/96, complete genomeSmall protein A7e-42169
NC_012947:1106000:111955611195561119897342Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein4e-43173
CU928145:2973968:297674229767422977083342Escherichia coli 55989 chromosome, complete genomesmall membrane lipoprotein4e-43173
NC_011748:2973968:297674229767422977083342Escherichia coli 55989, complete genomehypothetical protein4e-43173
NC_008563:2909945:291271929127192913060342Escherichia coli APEC O1, complete genomesmall membrane lipoprotein4e-43173
NC_012967:2669182:267508926750892675241153Escherichia coli B str. REL606 chromosome, complete genomesmall membrane lipoprotein7e-1889.4
NC_012759:2633949:263743926374392637780342Escherichia coli BW2952 chromosome, complete genomehypothetical protein4e-43173
NC_004431:3012668:301619130161913016532342Escherichia coli CFT073, complete genomeSmall protein A4e-43173
NC_009801:2898426:290393829039382904279342Escherichia coli E24377A, complete genomelipoprotein, SmpA/OmlA family4e-43173
NC_009800:2788164:279388227938822794223342Escherichia coli HS, complete genomelipoprotein, SmpA/OmlA family4e-43173
CU928160:2818750:282056028205602820901342Escherichia coli IAI1 chromosome, complete genomesmall membrane lipoprotein4e-43173
NC_011741:2818750:282056028205602820901342Escherichia coli IAI1 chromosome, complete genomehypothetical protein4e-43173
NC_011750:2928990:293080029308002931141342Escherichia coli IAI39 chromosome, complete genomehypothetical protein4e-43173
NC_000913:2746886:275162727516272751968342Escherichia coli K12, complete genomesmall membrane lipoprotein4e-43173
CP002516:1165726:118097811809781181319342Escherichia coli KO11, complete genomeSmpA/OmlA domain-containing protein4e-43173
NC_016902:1165726:118097811809781181319342Escherichia coli KO11FL chromosome, complete genomeSmpA/OmlA domain-containing protein4e-43173
AP010958:3238742:324222932422293242570342Escherichia coli O103:H2 str. 12009 DNA, complete genomesmall membrane lipoprotein SmpA4e-43173
NC_013353:3238742:324222932422293242570342Escherichia coli O103:H2 str. 12009, complete genomesmall membrane lipoprotein SmpA4e-43173
NC_013364:3312379:331418933141893314530342Escherichia coli O111:H- str. 11128, complete genomesmall membrane lipoprotein SmpA4e-43173
NC_002655:3538656:354365235436523543804153Escherichia coli O157:H7 EDL933, complete genomesmall membrane protein A7e-1889.4
NC_011353:3573641:357772235777223578063342Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein4e-43173
NC_002695:3468873:347380334738033473955153Escherichia coli O157:H7 str. Sakai, complete genomesmall membrane protein A7e-1889.4
NC_013008:3525428:353259935325993532940342Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-43173
NC_013361:3597812:360255336025533602894342Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein4e-43173
NC_011415:3006794:301243730124373012778342Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-43173
NC_010498:2847359:284916928491692849510342Escherichia coli SMS-3-5, complete genomeSmpA/OmlA family lipoprotein1e-42171
NC_010473:2839902:284339228433922843733342Escherichia coli str. K-12 substr. DH10B, complete genomesmall membrane lipoprotein4e-43173
NC_007946:2894793:289769328976932898034342Escherichia coli UTI89, complete genomesmall protein A precursor4e-43173
CP002185:2919752:292453829245382924879342Escherichia coli W, complete genomesmall membrane lipoprotein4e-43173
AC_000091:2747520:275226127522612752602342Escherichia coli W3110 DNA, complete genomesmall membrane lipoprotein4e-43173
NC_011740:448000:461394461394461735342Escherichia fergusonii ATCC 35469, complete genomesmall membrane lipoprotein4e-43173
NC_014366:2826575:283879628387962839302507Gamma proteobacterium HdN1, complete genomeprobable outer membrane lipoprotein OmlA7e-1062.8
NC_016612:28451:302603026030601342Klebsiella oxytoca KCTC 1686 chromosome, complete genomeouter membrane biogenesis protein BamE6e-45179
NC_016845:4077293:409637440963744096715342Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,hypothetical protein7e-43172
NC_009648:3224495:322939032293903229731342Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein7e-43172
NC_015276:565701:584739584739585056318Marinomonas mediterranea MMB-1 chromosome, complete genomeSmpA/OmlA domain-containing protein2e-0754.7
NC_007947:797456:816880816880817725846Methylobacillus flagellatus KT, complete genomeSmpA/OmlA1e-0652
NC_016745:1548426:156454315645431564881339Oceanimonas sp. GK1 chromosome, complete genomeSmall protein A1e-1168.6
NC_012917:833721:847441847441847776336Pectobacterium carotovorum subsp. carotovorum PC1, complete genomeSmpA/OmlA domain protein1e-42171
NC_016002:3077648:308556830855683085954387Pseudogulbenkiania sp. NH8B, complete genomeSmpA/OmlA domain containing protein5e-0960.1
NC_008027:775896:802041802041802565525Pseudomonas entomophila L48, complete genomeouter membrane lipoprotein OmlA6e-0959.7
NC_020209:3874844:387484438748443875374531Pseudomonas poae RE*1-1-14, complete genomeouter membrane lipoprotein1e-0755.1
NC_005773:4797242:480031848003184800839522Pseudomonas syringae pv. phaseolicola 1448A, complete genomeouter membrane lipoprotein OmlA3e-0857
NC_007005:4992730:499578849957884996309522Pseudomonas syringae pv. syringae B728a, complete genomeSmpA/OmlA3e-0857
NC_016147:1672482:169217416921741692569396Pseudoxanthomonas spadix BD-a59 chromosome, complete genomesmall membrane lipoprotein a (smpa)3e-0650.8
NC_016818:3736213:374256337425633742913351Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completesmall protein A (tmRNA-binding)2e-40164
NC_017047:3793000:379479737947973795141345Rahnella aquatilis HX2 chromosome, complete genomeouter membrane biogenesis protein BamE1e-40164
NC_015061:3725921:373013037301303730480351Rahnella sp. Y9602 chromosome, complete genomeSmpA/OmlA domain-containing protein1e-40164
NC_007973:1785985:178947217894721790029558Ralstonia metallidurans CH34 chromosome 1, complete sequenceSmpA/OmlA9e-0855.8
NC_007912:3466966:346745434674543467849396Saccharophagus degradans 2-40, complete genomeSmall protein A (tmRNA-binding)-like9e-1062.4
NC_020064:3609844:361487936148793615220342Serratia marcescens FGI94, complete genomesmall protein A (tmRNA-binding)3e-48189
NC_010506:1893000:189795718979571898460504Shewanella woodyi ATCC 51908, complete genomeSmpA/OmlA domain protein2e-1374.7
NC_017328:2785309:279102727910272791368342Shigella flexneri 2002017 chromosome, complete genomeSmall protein A4e-43173
NC_004741:2741971:274696727469672747119153Shigella flexneri 2a str. 2457T, complete genomesmall membrane protein A7e-1889.4
NC_004337:2747917:275233427523342752486153Shigella flexneri 2a str. 301, complete genomesmall membrane protein A7e-1889.4
NC_008258:2905413:291676329167632917062300Shigella flexneri 5 str. 8401, complete genomesmall membrane protein A9e-41165
NC_007712:3067000:306986230698623070212351Sodalis glossinidius str. 'morsitans', complete genomesmall protein A6e-38155
NC_012691:2476223:248169724816972482098402Tolumonas auensis DSM 9187, complete genomeSmpA/OmlA domain protein1e-0961.6
NC_012668:2744393:274717927471792747589411Vibrio cholerae MJ-1236 chromosome 1, complete sequencelipoprotein SmpA a component of the essential YaeT outer-membrane protein assembly complex9e-1579
NC_009457:351512:406956406956407366411Vibrio cholerae O395 chromosome 2, complete sequencesmall protein A9e-1579
NC_004459:349500:353229353229353588360Vibrio vulnificus CMCP6 chromosome I, complete sequenceSmall protein A3e-1787
NC_008800:1090000:111810511181051118446342Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein3e-50196
NC_015224:3587500:359248535924853592826342Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein3e-50196
NC_017168:4155143:416952041695204169861342Yersinia pestis A1122 chromosome, complete genomeouter membrane biogenesis protein BamE1e-53207
NC_010159:1417993:143165614316561431997342Yersinia pestis Angola, complete genomelipoprotein, SmpA/OmlA family1e-53207
NC_008150:650899:664240664240664581342Yersinia pestis Antiqua, complete genomehypothetical protein1e-53207
NC_017265:1136000:114883411488341149175342Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Outer membrane lipoprotein OmlA1e-53207
NC_005810:1130251:113507511350751135425351Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein9e-54208
NC_003143:1233128:124750412475041247854351Yersinia pestis CO92, complete genomehypothetical protein9e-54208
NC_017154:1225500:123879412387941239135342Yersinia pestis D106004 chromosome, complete genomehypothetical protein1e-53207
NC_017160:1507500:151247615124761512817342Yersinia pestis D182038 chromosome, complete genomehypothetical protein1e-53207
NC_004088:3382148:338697233869723387322351Yersinia pestis KIM, complete genomesmall membrane protein A9e-54208
NC_009381:2939782:294461529446152944956342Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein1e-53207
NC_014029:1283500:129670112967011297042342Yersinia pestis Z176003 chromosome, complete genomehypothetical protein1e-53207
NC_010634:1342393:135894913589491359290342Yersinia pseudotuberculosis PB1/+, complete genomeSmpA/OmlA domain-containing protein1e-53207