Pre_GI: BLASTP Hits

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Query: NC_008149:1221637:1221637 Yersinia pestis Nepal516, complete genome

Start: 1221637, End: 1222491, Length: 855

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from Nepal. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017154:3094000:311353131135313114385855Yersinia pestis D106004 chromosome, complete genomehypothetical protein3e-163574
NC_003143:2895617:289561728956172896471855Yersinia pestis CO92, complete genomehypothetical protein3e-163574
NC_004088:1291754:129175412917541292608855Yersinia pestis KIM, complete genomehypothetical protein3e-163574
NC_008800:4389687:438968743896874390520834Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein4e-97354
NC_011745:291422:310012310012310845834Escherichia coli ED1a chromosome, complete genomeputative transcriptional regulator7e-94343
NC_012724:2443500:244352924435292444449921Burkholderia glumae BGR1 chromosome 1, complete genomeTranscriptional regulator, RpiR family protein1e-42173
NC_008358:2257787:227156122715612272391831Hyphomonas neptunium ATCC 15444, complete genomeSIS domain protein2e-41169
NC_008254:3980327:399500239950023995925924Mesorhizobium sp. BNC1, complete genometranscriptional regulator, RpiR family2e-35149
NC_011985:61003:972699726998153885Agrobacterium radiobacter K84 chromosome 1, complete genometranscriptional regulator protein2e-32139
NC_014323:3976351:403028740302874031168882Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein3e-27122
NC_009079:1492664:151177715117771512637861Burkholderia mallei NCTC 10247 chromosome I, complete sequencephosphosugar-binding transcriptional regulator, RpiR family3e-24112
NC_010505:5035668:504276550427655043655891Methylobacterium radiotolerans JCM 2831, complete genometranscriptional regulator, RpiR family3e-23108
NC_015376:2241000:224701822470182247878861Burkholderia gladioli BSR3 chromosome chromosome 2, completetranscriptional regulator, RpiR family7e-23107
NC_014640:6745873:679667267966726797544873Achromobacter xylosoxidans A8 chromosome, complete genomeRpiR family transcriptional regulator4e-2098.6
NC_016630:1385719:139135113913511392217867Filifactor alocis ATCC 35896 chromosome, complete genometranscriptional regulator4e-2098.6
NC_015675:6493444:650704465070446507949906Mesorhizobium opportunistum WSM2075 chromosome, complete genomeRpiR family transcriptional regulator1e-1997.4
NC_014923:5940500:595237359523735953278906Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completesugar isomerase (SIS)1e-1997.4
NC_019973:5869500:588133358813335882238906Mesorhizobium australicum WSM2073, complete genometranscriptional regulator1e-1997.4
NC_014657:1193985:119567511956751196538864Caldicellulosiruptor owensensis OL chromosome, complete genometranscriptional regulator, rpir family8e-1994.4
NC_015389:616430:639327639327640196870Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, RpiR family6e-1788.2
NC_011958:1031592:106964510696451070505861Rhodobacter sphaeroides KD131 chromosome 2, complete genomeTranscriptional regulator, RpiR family1e-1687
NC_014323:3976351:402026640202664021225960Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein2e-1273.2
NC_004193:375416:641553641553642401849Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator1e-1067.4
NC_015634:2933712:295589529558952956770876Bacillus coagulans 2-6 chromosome, complete genomeRpiR family transcriptional regulator6e-1065.1
NC_012914:336750:343488343488344321834Paenibacillus sp. JDR-2, complete genometranscriptional regulator, RpiR family8e-1064.3
NC_020063:2449554:247206824720682472898831Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator2e-0963.2
NC_008800:4013298:402615540261554027015861Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,transcriptional regulator5e-0962
NC_008314:1202963:120453312045331205366834Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator7e-0961.6
NC_017046:1164176:117185511718551172679825Salmonella enterica subsp. enterica serovar Typhimurium str. 798transcriptional regulator1e-0860.5
NC_014219:192555:206560206560207414855Bacillus selenitireducens MLS10 chromosome, complete genometranscriptional regulator, RpiR family1e-0860.8
NC_012125:2646792:265912026591202660001882Salmonella enterica subsp. enterica serovar Paratyphi C straintranscriptional regulator2e-0859.7
NC_011294:1085447:109314410931441094025882Salmonella enterica subsp. enterica serovar Enteritidis strtranscriptional regulator2e-0859.7
NC_011274:1094379:110205811020581102939882Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transcriptional regulator2e-0859.7
NC_011205:1186097:119377511937751194656882Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853RpiR family transcriptional regulator2e-0859.7
NC_004631:1842050:185456618545661855447882Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative transcriptional regulator2e-0859.7
NC_006905:1186895:119457411945741195455882Salmonella enterica subsp. enterica serovar Choleraesuis strputative transcriptional regulator2e-0859.7
NC_011080:1209935:121761412176141218495882Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator, RpiR family2e-0859.7
NC_003198:1117687:112536611253661126247882Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative transcriptional regulator2e-0859.7
NC_010102:1979742:199189419918941992775882Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-0859.7
NC_011083:1216500:122000412200041220885882Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,transcriptional regulator, RpiR family2e-0859.7
NC_014410:2329838:234588623458862346728843Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,transcriptional regulator, RpiR family2e-0859.7
NC_016445:1363831:139663113966311397446816Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completesialic acid utilization regulator RpiR family2e-0859.7
NC_013124:2063460:206463220646322065471840Acidimicrobium ferrooxidans DSM 10331, complete genometranscriptional regulator, RpiR family2e-0859.7
NC_016831:1905289:192213519221351923016882Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative transcriptional regulator2e-0859.7
NC_016832:1838220:185141618514161852297882Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,RpiR-family transcriptional regulator2e-0859.7
NC_010067:1782998:179623817962381797119882Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-0860.1
NC_015224:3892972:390341039034103904270861Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,transcriptional regulator2e-0860.1
NC_012578:1838470:187236418723641873200837Vibrio cholerae M66-2 chromosome I, complete sequencePutative HTH-type transcriptional regulator ybbH2e-0860.1
NC_009457:1444449:147833414783341479170837Vibrio cholerae O395 chromosome 2, complete sequencehypothetical protein2e-0860.1
NC_016863:1165232:117291111729111173792882Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transcriptional regulator2e-0860.1
NC_016860:1205282:121296112129611213842882Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator2e-0860.1
NC_016856:1165941:117362011736201174501882Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative transcriptional regulator2e-0860.1
NC_016810:1163919:117159811715981172479882Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator2e-0860.1
NC_011094:1166271:117395011739501174831882Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator, RpiR family protein2e-0860.1
NC_003197:1207597:121527512152751216156882Salmonella typhimurium LT2, complete genomeputative transcriptional regulator2e-0860.1
NC_012668:1688500:172144717214471722277831Vibrio cholerae MJ-1236 chromosome 1, complete sequencesialic acid utilization regulator RpiR family2e-0860.1
NC_016857:1163919:117159811715981172512915Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative transcriptional regulator2e-0860.1
NC_015379:3570658:359231735923173593171855Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,conserved hypothetical protein, containing Helix-turn-helix domain, rpiR family2e-0859.7
NC_017270:1755552:176398117639811764817837Vibrio cholerae LMA3984-4 chromosome chromosome I, completeSialic acid utilization regulator, RpiR family4e-0858.9
NC_006511:1770000:178216817821681783049882Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative transcriptional regulator5e-0858.5
NC_011147:1763681:177735117773511778232882Salmonella enterica subsp. enterica serovar Paratyphi A strtranscriptional regulator5e-0858.5
NC_009485:1222697:123782312378231238635813Bradyrhizobium sp. BTAi1 chromosome, complete genomeRpiR family transcriptional regulator7e-0858.2
NC_008358:2574343:257961025796102580443834Hyphomonas neptunium ATCC 15444, complete genometranscriptional regulator, RpiR family8e-0857.8
NC_013515:1125739:113914011391401139958819Streptobacillus moniliformis DSM 12112, complete genometranscriptional regulator, RpiR family1e-0757.4
NC_020209:397376:451535451535452386852Pseudomonas poae RE*1-1-14, complete genomehypothetical protein3e-0755.8
NC_005139:2201820:227140422714042272330927Vibrio vulnificus YJ016 chromosome I, complete sequencetranscriptional regulator7e-0754.7
NC_014377:321949:336280336280337122843Thermosediminibacter oceani DSM 16646 chromosome, complete genometranscriptional regulator, RpiR family1e-0654.3
NC_013171:1677543:168050016805001681339840Anaerococcus prevotii DSM 20548, complete genometranscriptional regulator, RpiR family2e-0653.1
NC_004129:2440744:245737724573772458264888Pseudomonas fluorescens Pf-5, complete genomeSIS domain protein2e-0653.5
NC_007510:973828:9935829935829955101929Burkholderia sp. 383 chromosome 1, complete sequenceGlucokinase4e-0652.4
NC_009439:4913767:491696849169684917834867Pseudomonas mendocina ymp, complete genomeRpiR family transcriptional regulator4e-0652.4
NC_007651:1726472:1749745174974517516701926Burkholderia thailandensis E264 chromosome I, complete sequenceglucokinase/transcriptional regulator, RpiR family, fusion4e-0652
NC_015389:809474:815699815699816547849Coriobacterium glomerans PW2 chromosome, complete genometranscriptional regulator, RpiR family8e-0651.2
NC_007511:1094050:111669911166991117577879Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, RpiR family9e-0651.2