Pre_GI: BLASTP Hits

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Query: NC_008148:258292:274556 Rubrobacter xylanophilus DSM 9941, complete genome

Start: 274556, End: 277021, Length: 2466

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013526:567500:5765085765085790842577Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genomeCRISPR-associated helicase Cas38e-174611
NC_015387:2072237:2079360207936020816362277Marinithermus hydrothermalis DSM 14884 chromosome, complete genomemetal dependent phosphohydrolase1e-86322
NC_015416:2723189:2751286275128627537542469Methanosaeta concilii GP-6 chromosome, complete genomecrispr-associated helicase Cas35e-79296
NC_015660:3467579:3467579346757934700622484Geobacillus thermoglucosidasius C56-YS93 chromosome, completeCRISPR-associated HD domain-containing protein9e-75282
NC_011899:1603500:1626098162609816285662469Halothermothrix orenii H 168, complete genomeCRISPR-associated helicase Cas36e-72272
NC_014209:2204515:2217893221789322202472355Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,CRISPR-associated helicase Cas32e-71271
NC_014098:2735500:2740062274006227426232562Bacillus tusciae DSM 2912 chromosome, complete genomeCRISPR-associated helicase Cas34e-70266
NC_007681:482445:4859174859174883042388Methanosphaera stadtmanae DSM 3091, complete genomepredicted helicase4e-69263
NC_017278:258921:2589212589212611582238Thermus sp. CCB_US3_UF1 chromosome, complete genomehypothetical protein4e-68259
NC_014915:332784:3446143446143469442331Geobacillus sp. Y412MC52 chromosome, complete genomeCRISPR-associated HD domain protein2e-67258
NC_012438:776260:7906217906217929092289Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeCRISPR-associated helicase Cas32e-65251
NC_021184:823000:8283508283508306982349Desulfotomaculum gibsoniae DSM 7213, complete genomeCRISPR-associated helicase Cas3/CRISPR-associated endonuclease Cas3-HD2e-64247
NC_017161:1117741:1126688112668811289942307Hydrogenobacter thermophilus TK-6 chromosome, complete genomeCRISPR-associated helicase Cas35e-63243
NC_013799:1117750:1126830112683011291362307Hydrogenobacter thermophilus TK-6, complete genomeCRISPR-associated helicase5e-63243
NC_003901:678340:6852926852926877242433Methanosarcina mazei Go1, complete genomehypothetical protein8e-48192
NC_013714:1830959:1842567184256718451102544Bifidobacterium dentium Bd1, complete genomeCRISPR-associated helicase Cas32e-44181
NC_015387:261799:2664582664582685932136Marinithermus hydrothermalis DSM 14884 chromosome, complete genomemetal dependent phosphohydrolase6e-44179
NC_010995:2798000:2807956280795628104092454Cellvibrio japonicus Ueda107, complete genomeCRISPR-associated helicase Cas3 domain protein6e-43176
NC_008942:815280:8345898345898370932505Methanocorpusculum labreanum Z, complete genomehypothetical protein2e-42174
NC_008618:1456000:1468122146812214705392418Bifidobacterium adolescentis ATCC 15703, complete genomepredicted CRISPR-associated helicase4e-42173
NC_014221:1786122:1788888178888817912062319Truepera radiovictrix DSM 17093 chromosome, complete genomeCRISPR-associated helicase Cas35e-42173
NC_007947:621213:6246826246826269192238Methylobacillus flagellatus KT, complete genomemetal dependent phosphohydrolase9e-42172
NC_010003:2056000:2075621207562120778132193Petrotoga mobilis SJ95, complete genomeCRISPR-associated helicase Cas32e-40168
NC_017218:1655009:1666981166698116694192439Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeCRISPR-associated helicase Cas33e-40167
NC_006177:324363:3470963470963492552160Symbiobacterium thermophilum IAM 14863, complete genomehypothetical protein1e-39165
NC_015589:3053504:3063199306319930655742376Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeCRISPR-associated HD domain-containing protein6e-39163
NC_007759:2748000:2758821275882127613282508Syntrophus aciditrophicus SB, complete genomeATP-dependent RNA helicase1e-38161
NC_012108:616088:6267306267306289912262Desulfobacterium autotrophicum HRM2, complete genomeputative CRISPR-associated helicase Cas3 (ATP-dependent DNA helicase)8e-37156
NC_020126:9726992:9738646973864697408802235Myxococcus stipitatus DSM 14675, complete genomeCRISPR-associated helicase Cas36e-37156
NC_011060:1746000:1754304175430417565232220Pelodictyon phaeoclathratiforme BU-1, complete genomeCRISPR-associated helicase Cas32e-36154
NC_009523:5438000:5448155544815554508692715Roseiflexus sp. RS-1 chromosome, complete genomeCRISPR-associated helicase Cas34e-36154
NC_013740:842841:8744968744968766822187Acidaminococcus fermentans DSM 20731, complete genomemetal dependent phosphohydrolase4e-36154
NC_015677:3685452:3691484369148436937722289Ramlibacter tataouinensis TTB310 chromosome, complete genomehypothetical protein6e-36153
NC_006513:1949751:1959781195978119622672487Azoarcus sp. EbN1, complete genomepredicted CRISPR-associated helicase2e-35151
NC_007777:3962000:3963334396333439655892256Frankia sp. CcI3, complete genomeCRISPR-associated helicase Cas3, core4e-35150
NC_013204:2305140:2318079231807923202772199Eggerthella lenta DSM 2243, complete genomemetal dependent phosphohydrolase1e-34149
NC_014960:1380500:1389942138994213931483207Anaerolinea thermophila UNI-1, complete genomehypothetical protein7e-35149
NC_016630:28410:3300133001355892589Filifactor alocis ATCC 35896 chromosome, complete genomeATP-dependent RNA helicase2e-33144
NC_014484:447889:4532194532194555282310Spirochaeta thermophila DSM 6192 chromosome, complete genomehypothetical protein2e-33144
NC_011963:1979136:1986779198677919890132235Rhodobacter sphaeroides KD131 chromosome 1, complete sequenceCRISPR-associated helicase, Cas3 family4e-33144
NC_005085:1269787:1285455128545512875362082Chromobacterium violaceum ATCC 12472, complete genomehypothetical protein2e-32141
NC_014364:1116439:1120569112056911227942226Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeCRISPR-associated helicase Cas33e-32140
NC_015873:2197412:2197412219741221996042193Megasphaera elsdenii DSM 20460, complete genomemetal dependent phosphohydrolase8e-32139
NC_009337:1448607:1453899145389914558961998Chlorobium phaeovibrioides DSM 265 chromosome, complete genomeCRISPR-associated helicase Cas3 family protein1e-31139
NC_007512:1459685:1465575146557514676532079Pelodictyon luteolum DSM 273, complete genomeCRISPR-associated helicase Cas3, core2e-31138
NC_009615:1354122:1372739137273913749642226Parabacteroides distasonis ATCC 8503 chromosome, complete genomehelicase2e-31138
NC_013947:3785332:3796425379642537987042280Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeCRISPR-associated helicase Cas33e-31137
NC_004757:905417:9093379093379113792043Nitrosomonas europaea ATCC 19718, complete genomeDEAD/DEAH box helicase:HD domain3e-31137
NC_012470:1606000:1612460161246016149132454Streptococcus equi subsp. zooepidemicus, complete genomeCRISPR-associated helicase8e-30132
NC_014935:1047411:1058060105806010602372178Nitratifractor saLSUginis DSM 16511 chromosome, complete genomecrispr-associated helicase, cas3 family1e-29132
NC_007681:1082000:1085878108587810886312754Methanosphaera stadtmanae DSM 3091, complete genomepredicted helicase2e-29131
NC_021175:353292:3564363564363588502415Streptococcus oligofermentans AS 1.3089, complete genomehypothetical protein5e-29130
NC_010610:1385066:1400770140077014032082439Lactobacillus fermentum IFO 3956, complete genomehypothetical protein7e-29129
NC_019968:8397:1357413574157692196Prevotella dentalis DSM 3688 chromosome 2, complete sequenceCRISPR-associated helicase Cas3/CRISPR-associated endonuclease Cas3-HD6e-29129
NC_009715:873280:8808488808488830222175Campylobacter curvus 525.92 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein4e-27124
NC_016584:1912000:1918122191812219205692448Desulfosporosinus orientis DSM 765 chromosome, complete genomeCRISPR-associated helicase Cas3/CRISPR-associated endonuclease Cas3-HD4e-26120
NC_007955:1198994:1207778120777812104202643Methanococcoides burtonii DSM 6242, complete genomeCRISPR-associated helicase Cas31e-25119
NC_019673:2051363:2085060208506020872942235Saccharothrix espanaensis DSM 44229 complete genomeCRISPR-associated helicase Cas3 family protein protein6e-23110
NC_015976:1893076:1907423190742319097742352Sphingobium sp. SYK-6, complete genomeCRISPR-associated helicase Cas36e-22106
NC_016884:3219030:3251274325127432536402367Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeCRISPR-associated HD domain-containing protein4e-21103
NC_015757:2343193:2373204237320423755702367Sulfobacillus acidophilus TPY chromosome, complete genomeCRISPR-associated helicase Cas34e-21103
NC_015634:2492771:2505441250544125079872547Bacillus coagulans 2-6 chromosome, complete genomeCRISPR-associated endonuclease Cas7e-1996.7
NC_019897:3251639:3287049328704932894392391Thermobacillus composti KWC4 chromosome, complete genomeCRISPR-associated helicase Cas38e-1996.3
NC_016609:5986500:5992325599232559950962772Niastella koreensis GR20-10 chromosome, complete genomeCRISPR-associated HD domain-containing protein7e-1790.1
NC_014624:140000:1452031452031477882586Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein3e-1274.3
NC_019942:1370872:1377646137764613798472202Aciduliprofundum sp. MAR08-339, complete genomeDEAD/DEAH box helicase1e-1172.4
NC_021184:504728:5252555252555276392385Desulfotomaculum gibsoniae DSM 7213, complete genomeCRISPR-associated helicase Cas3/CRISPR-associated endonuclease Cas3-HD1e-1172.4
NC_000961:135493:1538931538931559652073Pyrococcus horikoshii OT3, complete genomehypothetical protein3e-1171.2
NC_016051:460624:4687704687704713762607Thermococcus sp. AM4 chromosome, complete genomeCRISPR-associated helicase Cas31e-0862.4
NC_000916:983500:1001172100117210036642493Methanothermobacter thermautotrophicus str. Delta H, completehypothetical protein4e-0757.4