Pre_GI: BLASTP Hits

Some Help

Query: NC_008148:2498000:2520326 Rubrobacter xylanophilus DSM 9941, complete genome

Start: 2520326, End: 2520988, Length: 663

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016025:552000:561697561697562284588Candidatus Chloracidobacterium thermophilum B chromosome chromosomeputative transcriptional regulator3e-63241
NC_014010:1850500:188064418806441881270627Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeDNA-binding protein2e-41168
NC_012808:2886282:289424728942472894843597Methylobacterium extorquens AM1, complete genomeputative transcriptional regulator, XRE family3e-36151
NC_011757:517000:548476548476549072597Methylobacterium chloromethanicum CM4, complete genometranscriptional regulator, XRE family5e-35147
NC_012791:2386000:239303923930392393611573Variovorax paradoxus S110 chromosome 1, complete genometranscriptional regulator, XRE family3e-24112
NC_012792:627500:634865634865635437573Variovorax paradoxus S110 chromosome 2, complete genometranscriptional regulator, XRE family6e-24110
NC_012791:4794362:481375648137564814277522Variovorax paradoxus S110 chromosome 1, complete genometranscriptional regulator, XRE family4e-23107
NC_015727:764744:769843769843770589747Cupriavidus necator N-1 plasmid BB1p, complete sequenceCro/CI family transcriptional regulator protein5e-23107
NC_012108:946314:962372962372962944573Desulfobacterium autotrophicum HRM2, complete genometranscriptional regulator (Cro/CI family protein)4e-21101
NC_009659:997779:100550010055001006123624Janthinobacterium sp. Marseille chromosome, complete genomeCro/CI family transcriptional regulator1e-1686.7
NC_014831:1843835:186641118664111867175765Thermaerobacter marianensis DSM 12885 chromosome, complete genomeCupin 2 conserved barrel domain protein9e-1683.6
NC_012032:2925000:293613129361312936766636Chloroflexus sp. Y-400-fl, complete genometranscriptional regulator, XRE family1e-1582.8
NC_010175:2925084:294094629409462941581636Chloroflexus aurantiacus J-10-fl, complete genomeCupin 2 conserved barrel domain protein1e-1582.8
NC_015723:2116090:211951321195132120103591Cupriavidus necator N-1 chromosome 2, complete sequenceN-carbamoyl-L-amino acid hydrolase AmaB2e-1582.8
NC_014640:5047201:504847650484765049030555Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein5e-1581.3
NC_007907:4859735:487526948752694875916648Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-1581.3
NC_013939:1535071:155165715516571552193537Deferribacter desulfuricans SSM1, complete genomeXRE family transcriptional regulator2e-1479.3
NC_015500:900807:900807900807901394588Treponema brennaborense DSM 12168 chromosome, complete genomehelix-turn-helix domain protein2e-1479.3
NC_020126:7285452:729938772993877299959573Myxococcus stipitatus DSM 14675, complete genomeXRE family transcriptional regulator4e-1478.2
NC_007907:4859735:487593148759314876476546Desulfitobacterium hafniense Y51, complete genomehypothetical protein7e-1477.4
NC_014960:1697818:171901417190141719634621Anaerolinea thermophila UNI-1, complete genomehypothetical protein2e-1376.3
NC_009654:2940278:294247229424722943083612Marinomonas sp. MWYL1, complete genomeXRE family transcriptional regulator4e-1375.1
NC_016818:3736213:375836837583683758922555Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completeputative transcriptional regulator4e-1374.7
NC_017273:352150:357368357368357946579Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, completecupin5e-1374.3
NC_014118:2417838:242979424297942430366573Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, XRE family6e-1374.3
NC_009617:4805413:480886648088664809417552Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeXRE family transcriptional regulator6e-1374.3
NC_015276:2769000:277194627719462772557612Marinomonas mediterranea MMB-1 chromosome, complete genomehelix-turn-helix domain protein6e-1374.3
NC_015577:3688071:370597937059793706536558Treponema azotonutricium ZAS-9 chromosome, complete genomeXRE family transcriptional regulator with cupin sensor1e-1273.6
NC_016048:3856665:387693238769323877567636Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein1e-1273.2
NC_007948:3502843:352327835232783523883606Polaromonas sp. JS666, complete genometranscriptional regulator, XRE family with cupin sensor domain2e-1272.8
NC_009380:3903392:390735439073543908001648Salinispora tropica CNB-440 chromosome, complete genomecupin2e-1272.8
NC_014328:1286407:130205613020561302601546Clostridium ljungdahlii ATCC 49587 chromosome, complete genometranscriptional regulator3e-1271.6
NC_014532:1481787:150309715030971503672576Halomonas elongata DSM 2581, complete genomehypothetical protein3e-1271.6
NC_009089:1283000:131939013193901319941552Clostridium difficile 630, complete genomeputative transcriptional regulator4e-1271.6
NC_008253:1228485:123373712337371234321585Escherichia coli 536, complete genomeprobable transcriptional regulator6e-1270.9
NC_011745:1287714:129306912930691293653585Escherichia coli ED1a chromosome, complete genomeputative transcriptional regulator6e-1270.9
NC_013235:464049:465497465497466090594Nakamurella multipartita DSM 44233, complete genometranscriptional regulator, XRE family6e-1270.9
NC_013941:733286:745237745237745821585Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeHelix-turn-helix domain protein6e-1270.9
NC_006510:2910000:291967829196782920220543Geobacillus kaustophilus HTA426, complete genomehypothetical protein1e-1169.7
NC_015663:3742738:375698237569823757566585Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative transcriptional regulator2e-1168.9
NC_009515:307800:310577310577311137561Methanobrevibacter smithii ATCC 35061, complete genomexenobiotic response element family DNA binding protein3e-1168.6
NC_019673:3253650:325551432555143256071558Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, XRE family3e-1168.6
NC_009614:821247:823492823492824046555Bacteroides vulgatus ATCC 8482 chromosome, complete genometranscriptional regulator3e-1168.6
NC_020181:1653261:166067016606701661254585Enterobacter aerogenes EA1509E, complete genomeFIG00644802: hypothetical protein4e-1168.2
NC_011144:2770842:278904627890462789666621Phenylobacterium zucineum HLK1, complete genometranscriptional regulator, Cro/CI family4e-1168.2
NC_008595:2215244:221785622178562218425570Mycobacterium avium 104, complete genomeregulatory protein5e-1167.8
NC_013665:918313:937836937836938390555Methanocella paludicola SANAE, complete genomeputative HTH-type transcriptional regulator8e-1167.4
NC_014815:3790050:379301037930103793594585Micromonospora sp. L5 chromosome, complete genomehelix-turn-helix domain protein8e-1167
NC_020064:79422:976759767598283609Serratia marcescens FGI94, complete genomeputative transcriptional regulator1e-1067
NC_006350:1084930:108965110896511090214564Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative DNA-binding protein1e-1067
NC_013510:747042:762300762300762866567Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, XRE family1e-1066.6
NC_016816:4129299:414295041429504143534585Pantoea ananatis LMG 5342, complete genomeputative transcriptional regulator1e-1066.2
NC_007650:2901751:295029503558609Burkholderia thailandensis E264 chromosome II, complete sequenceDNA-binding protein1e-1066.2
NC_020134:1328302:133941313394131339952540Clostridium stercorarium subsp. stercorarium DSM 8532, completeputative DNA-binding protein2e-1065.9
NC_015434:3507059:352202535220253522603579Verrucosispora maris AB-18-032 chromosome, complete genomeXRE family transcriptional regulator3e-1065.5
NC_013508:1862896:187347118734711874055585Edwardsiella tarda EIB202, complete genomepredicted transcriptional regulator5e-1064.7
NC_016048:2907702:293945829394582940024567Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein5e-1064.7
NC_016816:4129299:415585641558564156458603Pantoea ananatis LMG 5342, complete genomeB3/4 domain-containing protein4e-1064.7
NC_012522:7837071:785901578590157859641627Rhodococcus opacus B4, complete genomehypothetical protein5e-1064.3
NC_010511:4313769:431666343166634317268606Methylobacterium sp. 4-46 chromosome, complete genomeXRE family transcriptional regulator7e-1064.3
NC_011898:1762000:178029717802971780845549Clostridium cellulolyticum H10, complete genometranscriptional regulator, XRE family8e-1063.9
NC_014121:4577324:458073445807344581336603Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein1e-0963.5
NC_009075:3113393:294829483556609Burkholderia pseudomallei 668 chromosome II, complete sequenceDNA-binding protein1e-0963.5
NC_009078:3087759:294829483556609Burkholderia pseudomallei 1106a chromosome II, complete sequenceDNA-binding/cupin domain protein1e-0963.5
NC_007435:1825741:184202518420251842633609Burkholderia pseudomallei 1710b chromosome II, complete sequenceputative DNA-binding protein1e-0963.5
NC_009079:2339756:408640864694609Burkholderia mallei NCTC 10247 chromosome I, complete sequenceDNA-binding protein2e-0962.8
NC_006351:3159630:294629463554609Burkholderia pseudomallei K96243 chromosome 2, complete sequenceDNA-binding protein2e-0962.8
NC_008835:1483237:149940114994011500009609Burkholderia mallei NCTC 10229 chromosome I, complete sequenceDNA-binding protein2e-0962.8
NC_008784:1151305:116827711682771168885609Burkholderia mallei SAVP1 chromosome I, complete sequenceDNA-binding protein2e-0962.8
NC_006349:2311817:408640864694609Burkholderia mallei ATCC 23344 chromosome 2, complete sequenceDNA-binding protein2e-0962.8
UCMB5137:1:101211012110666546Bacillus atrophaeus UCMB-5137unknown4e-0961.6
NC_016516:2314115:232039223203922320976585Propionibacterium acnes TypeIA2 P.acn33 chromosome, completecupin domain protein4e-0961.6
NC_016511:2321999:232953423295342330118585Propionibacterium acnes TypeIA2 P.acn31 chromosome, completecupin domain protein4e-0961.6
NC_020063:3690308:373506937350693735671603Enterobacteriaceae bacterium strain FGI 57, complete genomeputative transcriptional regulator5e-0961.2
NC_016512:2322598:232886723288672329460594Propionibacterium acnes TypeIA2 P.acn17 chromosome, completecupin domain protein5e-0961.2
NC_004461:779000:788650788650789189540Staphylococcus epidermidis ATCC 12228, complete genomehypothetical protein6e-0960.8
NC_011080:1750000:175424417542441754846603Salmonella enterica subsp. enterica serovar Newport str. SL254,transcriptional regulator, Cro/CI family6e-0960.8
NC_014222:799229:801202801202801756555Methanococcus voltae A3 chromosome, complete genometranscriptional regulator, XRE family7e-0960.8
NC_014966:795311:815631815631816254624Vibrio vulnificus MO6-24/O chromosome II, complete sequencetranscriptional regulator9e-0960.5
NC_004557:1553000:155369415536941554401708Clostridium tetani E88, complete genomeputative transcriptional regulatory protein8e-0960.5
NC_012667:1045782:106175010617501062373624Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein7e-0960.5
NC_003197:1753663:175788917578891758491603Salmonella typhimurium LT2, complete genomeputative transcriptional regulator1e-0860.1
NC_016810:1709695:171474217147421715344603Salmonella enterica subsp. enterica serovar Typhimurium strDNA-binding protein1e-0860.1
NC_016856:1763640:176786617678661768468603Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative transcriptional regulator1e-0860.1
NC_016857:1709695:171474217147421715344603Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative transcriptional regulator1e-0860.1
NC_016860:1752000:175558017555801756182603Salmonella enterica subsp. enterica serovar Typhimurium strputative transcriptional regulator1e-0860.1
NC_016863:1711832:171605817160581716660603Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative transcriptional regulator1e-0860.1
NC_017046:1709578:171462517146251715227603Salmonella enterica subsp. enterica serovar Typhimurium str. 798DNA-binding protein1e-0860.1
NC_011149:1429523:144464314446431445245603Salmonella enterica subsp. enterica serovar Agona str. SL483,transcriptional regulator, Cro/CI family1e-0860.1
NC_006085:2384892:239089723908972391763867Propionibacterium acnes KPA171202, complete genomeputative transcriptional regulator1e-0860.1
NC_014039:2320307:232631423263142327180867Propionibacterium acnes SK137 chromosome, complete genomecupin domain protein1e-0860.1
NC_014328:2518081:253808325380832538637555Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein2e-0859.7
NC_004631:1623511:162855816285581629160603Salmonella enterica subsp. enterica serovar Typhi Ty2, completeconserved hypothetical DNA-binding protein2e-0859.7
NC_003198:1336894:135202213520221352624603Salmonella enterica subsp. enterica serovar Typhi str. CT18,conserved hypothetical DNA-binding protein2e-0859.7
NC_018524:301992:319448319448320035588Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomehelix-turn-helix family protein2e-0859.7
NC_011094:1726000:173106917310691731671603Salmonella enterica subsp. enterica serovar Schwarzengrund strtranscriptional regulator, Cro/CI family protein1e-0859.7
NC_016943:2391366:239702423970242397776753Blastococcus saxobsidens DD2, complete genomeputative transcriptional regulator1e-0859.7
NC_011147:1267005:128212412821241282726603Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-0859.3
NC_006511:1273162:128828112882811288883603Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCconserved hypothetical DNA-binding protein2e-0859.3
NC_011283:1178500:118395211839521184521570Klebsiella pneumoniae 342 chromosome, complete genomeDNA-binding protein2e-0859.3
NC_006905:1766000:177105217710521771654603Salmonella enterica subsp. enterica serovar Choleraesuis strputative transcriptional regulator3e-0858.5
NC_009718:1411793:143010814301081430635528Fervidobacterium nodosum Rt17-B1, complete genomecupin 2 domain-containing protein3e-0858.5
NC_009617:1487110:149075414907541491308555Clostridium beijerinckii NCIMB 8052 chromosome, complete genomehelix-turn-helix domain-containing protein3e-0858.5
NC_014258:42262:668136681367391579Pantoea vagans C9-1 plasmid pPag3, complete sequenceputative HTH-type transcriptional regulatory protein4e-0858.2
NC_016830:3230939:323805032380503238652603Pseudomonas fluorescens F113 chromosome, complete genomecro ci family transcriptional regulator5e-0858.2
NC_015379:3736500:375449337544933755095603Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative Transcription factor, Xre family5e-0858.2
NC_014532:2108897:211584221158422116432591Halomonas elongata DSM 2581, complete genomeprobable transcriptional regulator5e-0857.8
NC_014532:3596097:361884336188433619433591Halomonas elongata DSM 2581, complete genomeprobable transcriptional regulator6e-0857.8
NC_016630:1385719:139310813931081393626519Filifactor alocis ATCC 35896 chromosome, complete genomeCro/CI family transcriptional regulator6e-0857.8
NC_013521:345308:370775370775371347573Sanguibacter keddieii DSM 10542, complete genomepredicted transcriptional regulator6e-0857.8
NC_013406:3650300:365837636583763658936561Paenibacillus sp. Y412MC10 chromosome, complete genomeXRE family transcriptional regulator7e-0857.4
NC_003296:1696958:170194817019481702565618Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE TRANSCRIPTION REGULATOR PROTEIN9e-0857
NC_003296:1665569:167175816717581672375618Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePUTATIVE DNA-BINDING TRANSCRIPTIONAL REGULATORY TRANSCRIPTION REGULATOR PROTEIN9e-0857
NC_016645:279232:3038763038763054201545Pyrobaculum sp. 1860 chromosome, complete genometranscriptional regulator, XRE family1e-0757
NC_020064:2728569:273358927335892734137549Serratia marcescens FGI94, complete genomeputative transcriptional regulator1e-0756.6
NC_020063:4653422:466162746616274662175549Enterobacteriaceae bacterium strain FGI 57, complete genomeputative transcriptional regulator1e-0756.6
NC_013729:2258582:225858222585822259178597Kribbella flavida DSM 17836, complete genometranscriptional regulator, XRE family2e-0755.8
NC_006932:1795500:1799556179955618015081953Brucella abortus biovar 1 str. 9-941 chromosome I, completetranscriptional regulator, Cro/CI family2e-0755.8
NC_010103:1777000:1780871178087117828231953Brucella canis ATCC 23365 chromosome I, complete sequencehypothetical protein2e-0755.8
NC_010742:1794000:1797845179784517997971953Brucella abortus S19 chromosome 1, complete sequencetranscriptional regulator, Cro/CI family2e-0755.8
NC_010167:1287000:1290803129080312927551953Brucella suis ATCC 23445 chromosome II, complete sequencehypothetical protein2e-0755.8
NC_008314:1275617:128201212820121282749738Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator3e-0755.1
NC_013947:4363250:437654343765434377166624Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, XRE family4e-0755.1
NC_015566:2328771:233006823300682330631564Serratia sp. AS12 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0755.1
NC_015567:2328782:233007923300792330642564Serratia sp. AS9 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0755.1
NC_004310:1777721:1782720178272017846481929Brucella suis 1330 chromosome I, complete sequencetranscriptional regulator, Cro/CI family4e-0755.1
NC_010723:915697:919767919767920132366Clostridium botulinum E3 str. Alaska E43, complete genometranscriptional regulator5e-0754.7
NC_007618:1792500:1796708179670817986361929Brucella melitensis biovar Abortus 2308 chromosome I, completeSAM (and some other nucleotide) binding motif:Helix-turn-helix motif4e-0754.7
NC_015857:1809500:1813481181348118154091929Brucella pinnipedialis B2/94 chromosome chromosome 1, completeCro/CI family transcriptional regulator4e-0754.7
NC_010067:3538169:353816935381693538783615Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-0754.3
NC_014121:4043198:405680640568064057378573Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein9e-0753.9
NC_007907:4956500:498991149899114990465555Desulfitobacterium hafniense Y51, complete genomehypothetical protein9e-0753.5
NC_009253:897684:948103948103948735633Desulfotomaculum reducens MI-1 chromosome, complete genomeXRE family transcriptional regulator1e-0653.5
NC_007948:4558000:460677746067774607370594Polaromonas sp. JS666, complete genometranscriptional regulator, XRE family1e-0653.5
NC_008701:391216:3967843967843983341551Pyrobaculum islandicum DSM 4184, complete genometranscriptional regulator, XRE family1e-0653.1
NC_007974:1607500:162676616267661627521756Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, XRE family with cupin sensor domain2e-0652.8
NC_013716:357928:389831389831390388558Citrobacter rodentium ICC168, complete genometranscriptional regulator of the polyamine metabolism genes2e-0652.8
NC_014624:1369642:137228713722871372838552Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein2e-0652.8
NC_012660:4149487:415199341519934152619627Pseudomonas fluorescens SBW25 chromosome, complete genomeputative DNA binding protein3e-0652
NC_015573:1979202:199861019986101999377768Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein4e-0651.6
NC_020064:1962172:199164219916421992199558Serratia marcescens FGI94, complete genomeputative transcriptional regulator4e-0651.6
NC_011837:3272752:329020132902013290443243Clostridium kluyveri NBRC 12016, complete genomehypothetical protein4e-0651.6
NC_009706:3341250:335869933586993358941243Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein4e-0651.6
NC_009253:897684:945674945674946330657Desulfotomaculum reducens MI-1 chromosome, complete genomeXRE family transcriptional regulator6e-0650.8
NC_007644:1638083:166268516626851663587903Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, XRE family8e-0650.4
NC_014618:1809369:183324018332401833797558Enterobacter cloacae SCF1 chromosome, complete genomecupin9e-0650.4