Pre_GI: BLASTP Hits

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Query: NC_008148:2053467:2058442 Rubrobacter xylanophilus DSM 9941, complete genome

Start: 2058442, End: 2059698, Length: 1257

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003155:7453994:7476683747668374779121230Streptomyces avermitilis MA-4680, complete genomeperiplasmic branched-chain amino acid-binding protein7e-38158
NC_016582:9422650:9443561944356194447781218Streptomyces bingchenggensis BCW-1 chromosome, complete genomebranched-chain amino acid transport system substrate-binding protein1e-36154
NC_016114:5539021:5563215556321555644501236Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeABC transporter substrate-binding protein3e-36152
NC_021177:1736854:1746033174603317472711239Streptomyces fulvissimus DSM 40593, complete genomeBranched chain amino acid binding protein1e-34147
NC_016625:171341:2005792005792017031125Burkholderia sp. YI23 chromosome 2, complete sequenceextracellular ligand-binding receptor9e-32138
NC_015953:1581542:1592724159272415939501227Streptomyces sp. SirexAA-E chromosome, complete genomeExtracellular ligand-binding receptor9e-32138
NC_008702:4064470:4086174408617440872891116Azoarcus sp. BH72, complete genomeprobable leucine-specific binding protein8e-32138
NC_010572:6463939:6489250648925064904431194Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative branched-chain amino acid ABC transporter substrate-binding protein5e-31135
NC_010557:679656:6890646890646901731110Burkholderia ambifaria MC40-6 chromosome 3, complete sequenceExtracellular ligand-binding receptor1e-29130
NC_011666:2259447:2259447225944722605651119Methylocella silvestris BL2, complete genomeExtracellular ligand-binding receptor2e-27124
NC_008702:4064470:4084668408466840857921125Azoarcus sp. BH72, complete genomeprobable leucine-specific binding protein2e-26120
NC_012658:545840:5468995468995480411143Clostridium botulinum Ba4 str. 657 chromosome, complete genomeputative high-affinity branched-chain amino acid ABC transporter amino acid-binding protein4e-25116
NC_010676:2658495:2672337267233726734791143Burkholderia phytofirmans PsJN chromosome 2, complete sequenceExtracellular ligand-binding receptor4e-25116
NC_016002:2652500:2665852266585226670001149Pseudogulbenkiania sp. NH8B, complete genomeextracellular ligand-binding receptor3e-25116
NC_010681:1234500:1249047124904712502101164Burkholderia phytofirmans PsJN chromosome 1, complete sequenceExtracellular ligand-binding receptor3e-25116
NC_012108:3824977:3831173383117338323301158Desulfobacterium autotrophicum HRM2, complete genomeABC-typ branched-chain amino acid transport system, periplasmic substrate binding component3e-24113
NC_010805:575709:5947735947735959211149Burkholderia multivorans ATCC 17616 chromosome 2, completebranched-chain amino acid transport system substrate-binding protein3e-24113
NC_010086:1816378:1879383187938318805311149Burkholderia multivorans ATCC 17616 chromosome 2, completeExtracellular ligand-binding receptor3e-24113
NC_009255:1105786:1143156114315611443041149Burkholderia vietnamiensis G4 chromosome 2, complete sequenceextracellular ligand-binding receptor3e-24113
NC_008543:323773:3252703252703264301161Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceExtracellular ligand-binding receptor6e-24112
NC_009953:188000:1903781903781915291152Salinispora arenicola CNS-205 chromosome, complete genomeextracellular ligand-binding receptor6e-24112
NC_008825:2063990:2076133207613320772601128Methylibium petroleiphilum PM1, complete genomeputative secreted substrate binding protein6e-24112
NC_013510:3324978:3334303333430333354451143Thermomonospora curvata DSM 43183, complete genomeExtracellular ligand-binding receptor3e-23110
NC_012791:2233098:2243498224349822446401143Variovorax paradoxus S110 chromosome 1, complete genomeExtracellular ligand-binding receptor3e-23110
NC_015499:119200:1428541428541439931140Thermodesulfobium narugense DSM 14796 chromosome, complete genomeExtracellular ligand-binding receptor2e-23110
NC_014323:3976351:3980128398012839812701143Herbaspirillum seropedicae SmR1 chromosome, complete genomebranched-chain amino acid ABC transporter periplasmic protein2e-23110
NC_010552:335989:3383023383023394531152Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceExtracellular ligand-binding receptor2e-22107
NC_016906:3006748:3011458301145830126871230Gordonia polyisoprenivorans VH2 chromosome, complete genomeleucine-, isoleucine-, valine-, threonine-, and alanine-binding protein BraC6e-22105
NC_003454:2080705:2100519210051921016701152Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeLeucine-, isoleucine-, valine-, threonine-, and alanine-binding protein2e-21103
NC_015387:2072237:2073114207311420742381125Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeExtracellular ligand-binding receptor7e-2098.6
NC_008751:2774000:2794966279496627960841119Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeExtracellular ligand-binding receptor2e-1997.1
NC_002937:614000:6169966169966181141119Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completehigh-affinity branched chain amino acid ABC transporter, periplasmic branched chain amino acid-binding protein2e-1997.1
NC_005773:694990:6977246977246988601137Pseudomonas syringae pv. phaseolicola 1448A, complete genomehigh affinity branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein2e-1997.1
NC_015138:2025000:2036773203677320379121140Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeextracellular ligand-binding receptor3e-1996.7
NC_015556:819503:8310258310258321461122Pseudomonas fulva 12-X chromosome, complete genomeExtracellular ligand-binding receptor1e-1791.3
NC_015224:279037:2812912812912825471257Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,branched-chain amino acid-binding protein2e-1790.9
NC_010511:5169338:5171493517149351725931101Methylobacterium sp. 4-46 chromosome, complete genomeextracellular ligand-binding receptor2e-1790.5
NC_008061:428501:4408634408634419811119Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceExtracellular ligand-binding receptor3e-1790.1
NC_008543:2035292:2037685203768520388031119Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceExtracellular ligand-binding receptor3e-1790.1
NC_010515:2358134:2372033237203323731511119Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceExtracellular ligand-binding receptor3e-1790.1
NC_007511:719493:7310787310787322771200Burkholderia sp. 383 chromosome 2, complete sequenceABC branched chain amino acid family transporter, periplasmic ligand binding protein3e-1789.7
NC_014831:786011:7933307933307945381209Thermaerobacter marianensis DSM 12885 chromosome, complete genomeamino acid/amide ABC transporter substrate-binding protein, HAAT family6e-1789
NC_011001:2517159:2520322252032225214401119Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative amino acid ABC transporter solute binding protein6e-1789
NC_008278:5012000:5014820501482050165261707Frankia alni ACN14a, complete genomePutative branched-chain amino acid ABC transporter, perisplasmic amino acid-binding protein1e-1688.2
NC_015656:2484749:2511587251158725132181632Frankia symbiont of Datisca glomerata chromosome, complete genomeExtracellular ligand-binding receptor1e-1687.8
NC_003296:1980687:1996311199631119974531143Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, completePROBABLE LEUCINE-SPECIFIC BINDING PRECURSOR TRANSMEMBRANE PROTEIN8e-1685.1
NC_008705:3201817:3209104320910432103151212Mycobacterium sp. KMS, complete genomeExtracellular ligand-binding receptor9e-1685.1
NC_009436:2685910:2687061268706126881821122Enterobacter sp. 638, complete genomeextracellular ligand-binding receptor2e-1584.3
NC_010552:2089140:2092992209299220941101119Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceExtracellular ligand-binding receptor2e-1584
NC_021066:1393750:1411247141124714123621116Raoultella ornithinolytica B6, complete genomeextracellular ligand-binding receptor2e-1584
NC_013740:15401:1741117411185891179Acidaminococcus fermentans DSM 20731, complete genomeExtracellular ligand-binding receptor4e-1582.8
NC_010681:74587:7995179951811291179Burkholderia phytofirmans PsJN chromosome 1, complete sequenceExtracellular ligand-binding receptor6e-1582.4
NC_011060:2099255:2114243211424321153641122Pelodictyon phaeoclathratiforme BU-1, complete genomeExtracellular ligand-binding receptor7e-1582
NC_015711:3085038:3107479310747931086571179Myxococcus fulvus HW-1 chromosome, complete genomeputative branched chain amino acid ABC transporter periplasmic amino acid-binding protein8e-1582
NC_009617:3184924:3218440321844032196211182Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeextracellular ligand-binding receptor8e-1582
NC_010337:98974:1023691023691035711203Heliobacterium modesticaldum Ice1, complete genomebranched chain amino acid abc transporter, amino acid-binding protein1e-1481.3
NC_011146:2200142:2235574223557422367671194Geobacter bemidjiensis Bem, complete genomeExtracellular ligand-binding receptor2e-1480.9
NC_011661:961129:9625519625519636811131Dictyoglomus turgidum DSM 6724, complete genomeExtracellular ligand-binding receptor2e-1480.5
NC_007946:3855445:3857693385769338588561164Escherichia coli UTI89, complete genomeleucine-specific binding protein precursor7e-1478.6
NC_011742:3799788:3805228380522838063371110Escherichia coli S88 chromosome, complete genomeleucine ABC transporter subunit substrate-binding protein9e-1478.2
NC_008563:3888232:3890480389048038915891110Escherichia coli APEC O1, complete genomeleucine transporter subunit9e-1478.2
NC_013216:956461:9566369566369577781143Desulfotomaculum acetoxidans DSM 771, complete genomeExtracellular ligand-binding receptor1e-1378.2
NC_011297:787932:7916897916897928191131Dictyoglomus thermophilum H-6-12, complete genomebranched chain amino acid ABC transporter2e-1377.8
NC_009376:1579332:1580401158040115817501350Pyrobaculum arsenaticum DSM 13514 chromosome, complete genomeextracellular ligand-binding receptor2e-1377
NC_016745:675909:6971166971166982011086Oceanimonas sp. GK1 chromosome, complete genomeleucine ABC transporter subunit substrate-binding protein LivK4e-1376.3
NC_016633:1898234:1899184189918419003501167Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomebranched-chain amino acid ABC transporter periplasmic protein7e-1375.5
NC_020291:6426704:6442797644279764439511155Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeamino acid/amide ABC transporter substrate-binding protein, HAAT family2e-1273.9
NC_007503:2010858:2024141202414120253251185Carboxydothermus hydrogenoformans Z-2901, complete genomehigh affinity branched-chain amino acid ABC transporter, amino acid-binding protein6e-1272.4
NC_016645:1059482:1070059107005910714021344Pyrobaculum sp. 1860 chromosome, complete genomebranched-chain amino acid binding protein6e-1272.4
NC_013939:913890:9285399285399296781140Deferribacter desulfuricans SSM1, complete genomebranched-chain amino acid ABC transporter substrate-binding protein2e-1170.9
NC_009437:2579161:2601627260162726028081182Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeextracellular ligand-binding receptor2e-1170.5
NC_008563:3888232:3892584389258438937441161Escherichia coli APEC O1, complete genomeLeu/Ile/Val-binding protein precursor3e-1170.1
NC_007946:3855445:3859797385979738609571161Escherichia coli UTI89, complete genomeLeu/Ile/Val-binding protein precursor3e-1170.1
NC_011742:3799788:3807332380733238084351104Escherichia coli S88 chromosome, complete genomeleucine/isoleucine/valine transporter subunit ; periplasmic-binding component of ABC superfamily3e-1170.1
NC_015275:566000:5665635665635677501188Clostridium lentocellum DSM 5427 chromosome, complete genomeExtracellular ligand-binding receptor4e-1169.7
NC_014532:110875:1316501316501328851236Halomonas elongata DSM 2581, complete genomeABC-type transport system periplasmic substrate-binding protein7e-1168.9
NC_013895:1282566:1295398129539812965551158Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completereceptor family ligand-binding protein8e-1168.6
NC_008278:5012000:5013384501338450145561173Frankia alni ACN14a, complete genomeputative branched chain amino acid binding protein precursor.2e-1067
NC_018581:3202281:3206627320662732079911365Gordonia sp. KTR9 chromosome, complete genomeABC-type branched-chain amino acid transport systems, periplasmic component1e-0964.7
NC_009483:2489000:2489003248900324901421140Geobacter uraniireducens Rf4 chromosome, complete genomeextracellular ligand-binding receptor2e-0861.2
NC_016147:3023180:3043998304399830451161119Pseudoxanthomonas spadix BD-a59 chromosome, complete genometwin-arginine translocation pathway signal2e-0860.8
NC_019964:1873167:1899797189979719010381242Halovivax ruber XH-70, complete genomeABC-type branched-chain amino acid transport system, periplasmic component3e-0860.5
NC_018876:996855:1000544100054410017821239Methanolobus psychrophilus R15 chromosome, complete genomeExtracellular ligand-binding receptor5e-0859.3
NC_007963:1582089:1604636160463616058501215Chromohalobacter salexigens DSM 3043, complete genomeExtracellular ligand-binding receptor2e-0757.4
NC_010645:1341475:1367359136735913685401182Bordetella avium 197N, complete genomeABC transporter, substrate-binding protein3e-0756.6
NC_012587:3613162:3635526363552636367191194Rhizobium sp. NGR234, complete genomeputative extracellular ligand-binding receptor1e-0654.7
NC_007973:3065632:3067829306782930689981170Ralstonia metallidurans CH34 chromosome 1, complete sequenceextracellular ligand-binding receptor6e-0652.4
NC_010995:1101614:1123276112327611244721197Cellvibrio japonicus Ueda107, complete genomeamide-urea binding protein8e-0652
NC_015318:1583839:1594624159462415957661143Hippea maritima DSM 10411 chromosome, complete genomeExtracellular ligand-binding receptor1e-0551.6