Pre_GI: BLASTP Hits

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Query: NC_008148:1859888:1916064 Rubrobacter xylanophilus DSM 9941, complete genome

Start: 1916064, End: 1916528, Length: 465

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012785:638000:648054648054648452399Kosmotoga olearia TBF 19.5.1, complete genomeRbsD or FucU transport2e-26118
NC_004337:3590323:394205639420563942475420Shigella flexneri 2a str. 301, complete genomeD-ribose high-affinity transport system; membrane-associated protein5e-24109
NC_015589:1468774:148905014890501489448399Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeRbsD or FucU transport4e-23106
NC_010320:143109:163609163609164001393Thermoanaerobacter sp. X514 chromosome, complete genomeD-ribose pyranase5e-21100
NC_014538:187747:203474203474203866393Thermoanaerobacter sp. X513 chromosome, complete genomeRbsD or FucU transport5e-21100
NC_012214:1:253832538325802420Erwinia pyrifoliae Ep1/96, complete genomeD-ribose high-affinity transport system8e-2095.9
NC_011725:681387:687974687974688369396Bacillus cereus B4264 chromosome, complete genomeD-ribose pyranase2e-1994.4
NC_004722:650950:657537657537657932396Bacillus cereus ATCC 14579, complete genomeHigh affinity ribose transport protein rbsD3e-1994.4
NC_011969:726369:733401733401733796396Bacillus cereus Q1 chromosome, complete genomed-ribose pyranase3e-1994
NC_016771:701909:711761711761712156396Bacillus cereus NC7401, complete genomeribose ABC transporter protein3e-1994
NC_011772:647778:655881655881656276396Bacillus cereus G9842, complete genomeribose ABC transporter protein3e-1994
NC_017208:671128:680051680051680446396Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeD-ribose pyranase3e-1994
NC_008261:2117207:211974921197492120144396Clostridium perfringens ATCC 13124, complete genomeribose ABC transporter, ribose-binding protein3e-1994
NC_003366:1901898:190443919044391904834396Clostridium perfringens str. 13, complete genomeprobable ribose ABC transporter7e-1992.8
NC_006274:659922:672436672436672831396Bacillus cereus E33L, complete genomeribose ABC transporter, permease8e-1992.8
NC_011978:1581994:158610815861081586515408Thermotoga neapolitana DSM 4359, complete genomeRibose ABC transporter, membrane-associated protein9e-1992.4
NC_000853:960248:976804976804977211408Thermotoga maritima MSB8, complete genomeribose ABC transporter, membrane-associated protein9e-1992.4
NC_010184:661226:669170669170669565396Bacillus weihenstephanensis KBAB4, complete genomeRbsD or FucU transport9e-1992.4
NC_007530:674265:684105684105684500396Bacillus anthracis str. 'Ames Ancestor', complete genomeribose abc transporter protein2e-1891.7
NC_005945:674337:684000684000684395396Bacillus anthracis str. Sterne, complete genomeribose ABC transporter protein2e-1891.7
NC_003997:674265:684104684104684499396Bacillus anthracis str. Ames, complete genomeribose ABC transporter protein2e-1891.7
NC_005957:667954:674987674987675382396Bacillus thuringiensis serovar konkukian str. 97-27, completeribose ABC transporter, permease2e-1891.7
NC_011773:688689:698542698542698937396Bacillus cereus AH820 chromosome, complete genomeD-ribose pyranase2e-1891.7
NC_012659:678289:684005684005684400396Bacillus anthracis str. A0248, complete genomeD-ribose pyranase2e-1891.7
NC_016779:657568:665514665514665909396Bacillus cereus F837/76 chromosome, complete genomeRibose ABC transporter high affinity permease RbsD2e-1891.7
NC_016614:686887:699051699051699470420Vibrio sp. EJY3 chromosome 2, complete sequenceD-ribose pyranase2e-1891.7
NC_016113:11500:286142861429003390Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequenceribose ABC transporter (membrane bound ribose binding)2e-1891.3
NC_004557:2475030:249155124915512491946396Clostridium tetani E88, complete genomehigh affinity ribose transport protein rbsD2e-1891.3
NC_008593:1797000:181901718190171819412396Clostridium novyi NT, complete genomeribose ABC transporter protein RbsD2e-1891.3
NC_017095:166896:168375168375168761387Fervidobacterium pennivorans DSM 9078 chromosome, complete genomeABC-type ribose transport system, auxiliary component9e-1889
NC_015425:2024154:204577020457702046165396Clostridium botulinum BKT015925 chromosome, complete genomeribose ABC transporter protein RbsD4e-1787
NC_013205:2332174:234225723422572342652396Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,RbsD or FucU transport2e-1685.1
NC_010556:2328303:234760123476012347990390Exiguobacterium sibiricum 255-15, complete genomeRbsD or FucU transport4e-1684
NC_015161:1556766:156242115624211562816396Deinococcus proteolyticus MRP chromosome, complete genomeD-ribose pyranase5e-1683.2
NC_021177:7159654:718079171807917181180390Streptomyces fulvissimus DSM 40593, complete genomeD-ribose pyranase 2 n19e-1682.4
NC_018665:2163713:218550121855012185890390Exiguobacterium antarcticum B7 chromosome, complete genomeD-ribose pyranase1e-1479
NC_013521:107937:112705112705113088384Sanguibacter keddieii DSM 10542, complete genomeABC-type ribose transport system, auxiliary component8e-1372.8
NC_014039:15236:222032220322586384Propionibacterium acnes SK137 chromosome, complete genomeRibose ABC transport system, high affinity permease RbsD2e-1271.6
NC_013721:1581370:159709915970991597494396Gardnerella vaginalis 409-05, complete genomeRbsD/FucU transport family protein2e-1271.2
NC_016511:15100:220682206822451384Propionibacterium acnes TypeIA2 P.acn31 chromosome, completeD-ribose pyranase3e-1270.9
NC_016512:15102:220702207022453384Propionibacterium acnes TypeIA2 P.acn17 chromosome, completeD-ribose pyranase3e-1270.9
NC_016516:15102:220702207022453384Propionibacterium acnes TypeIA2 P.acn33 chromosome, completeD-ribose pyranase3e-1270.9
NC_006085:15246:222142221422597384Propionibacterium acnes KPA171202, complete genomehigh affinity ribose transport protein RbsD4e-1270.5
NC_017218:1655009:167606016760601676455396Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeRbsD/FucU transport family protein1e-0858.5
NC_014169:1784435:181122018112201811615396Bifidobacterium longum subsp. longum JDM301 chromosome, completeRbsD/FucU transport family protein1e-0755.8