Pre_GI: BLASTP Hits

Some Help

Query: NC_008148:1859888:1913509 Rubrobacter xylanophilus DSM 9941, complete genome

Start: 1913509, End: 1914564, Length: 1056

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014206:3391352:3394558339455833955711014Geobacillus sp. C56-T3 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator5e-24112
NC_014377:1871333:187802218780221879011990Thermosediminibacter oceani DSM 16646 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator3e-23109
NC_019973:1731626:175841217584121759389978Mesorhizobium australicum WSM2073, complete genomeABC-type sugar transport system, periplasmic component2e-1997.1
NC_015675:1721543:174843017484301749407978Mesorhizobium opportunistum WSM2075 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator6e-1995.1
NC_014960:1910202:1927068192706819280781011Anaerolinea thermophila UNI-1, complete genomeABC transporter substrate binding protein precursor3e-1892.8
NC_016641:2894899:2908219290821929092261008Paenibacillus terrae HPL-003 chromosome, complete genomesugar ABC transporter periplasmic protein8e-1891.7
NC_013205:2965110:2971975297197529730241050Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,periplasmic binding protein/LacI transcriptional regulator1e-1791.3
NC_012785:638000:649402649402650280879Kosmotoga olearia TBF 19.5.1, complete genomeperiplasmic binding protein/LacI transcriptional regulator1e-1791.3
NC_015589:1468774:149197714919771492936960Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator2e-1790.1
NC_013205:2332174:233878923387892339754966Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,periplasmic binding protein/LacI transcriptional regulator2e-1790.1
NC_015519:686027:7030847030847040851002Tepidanaerobacter sp. Re1 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator3e-1789.4
NC_019673:8057941:808099480809948081962969Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator, LacI family4e-1789
NC_018681:7191008:719381671938167194811996Nocardia brasiliensis ATCC 700358 chromosome, complete genomesugar ABC transporter periplasmic protein6e-1788.6
NC_011899:1021672:103036310303631031325963Halothermothrix orenii H 168, complete genomeperiplasmic binding protein/LacI transcriptional regulator1e-1687.8
NC_014206:1694330:1700332170033217013391008Geobacillus sp. C56-T3 chromosome, complete genomesugar ABC transporter sugar-binding protein2e-1686.7
NC_016593:2015321:202665620266562027618963Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completesugar ABC transporter (Sugar-binding protein)4e-1685.9
NC_009328:1903291:1912506191250619135071002Geobacillus thermodenitrificans NG80-2 chromosome, complete genomesugar ABC transporter substrate-binding protein1e-1584.3
NC_017218:1655009:167658716765871677531945Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeD-ribose-binding periplasmic protein3e-1583.2
NC_011297:290737:300524300524301462939Dictyoglomus thermophilum H-6-12, complete genomeABC sugar transporter periplasmic ligand binding protein4e-1582.4
NC_014837:2709813:271725127172512718174924Pantoea sp. At-9b chromosome, complete genomeperiplasmic-binding protein/LacI transcriptional regulator4e-1582.4
NC_013850:2685835:271637227163722717325954Klebsiella variicola At-22 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator5e-1582.4
NC_011283:2684046:271157727115772712530954Klebsiella pneumoniae 342 chromosome, complete genomesugar-binding domain protein, LacI family7e-1581.6
NC_010162:7620000:7620592762059276230152424Sorangium cellulosum 'So ce 56', complete genomeputative sugar regulator8e-1581.6
NC_013642:942767:9505839505839516351053Thermotoga naphthophila RKU-10, complete genomeperiplasmic binding protein/LacI transcriptional regulator9e-1581.6
NC_011661:409943:417255417255418193939Dictyoglomus turgidum DSM 6724, complete genomeperiplasmic binding protein/LacI transcriptional regulator9e-1581.3
NC_015436:1:1372413724147551032Spirochaeta coccoides DSM 17374 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator1e-1480.9
NC_013406:1640787:1640787164078716417941008Paenibacillus sp. Y412MC10 chromosome, complete genomesugar ABC transporter (sugar-binding protein)4e-1479.3
NC_013721:1581370:159778915977891598727939Gardnerella vaginalis 409-05, complete genomeperiplasmic binding protein and sugar binding domain of the LacI family protein3e-1479.3
NC_011661:409943:4184244184244194281005Dictyoglomus turgidum DSM 6724, complete genomerhamnose ABC transporter, periplasmic rhamnose-binding protein8e-1478.2
NC_016771:2933886:294596029459602946955996Bacillus cereus NC7401, complete genomeperiplasmic sugar-binding proteins2e-1376.6
NC_011658:2978000:299008329900832991078996Bacillus cereus AH187 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator2e-1376.6
NC_010994:4071131:407491240749124075877966Rhizobium etli CIAT 652, complete genomeprobable sugar ABC transporter, substrate-binding protein3e-1376.6
NC_014923:1680095:1701038170103817020691032Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeputative ABC transporter periplasmic sugar-binding protein5e-1375.9
NC_009328:1903291:192429219242921925248957Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeD-ribose-binding periplasmic protein5e-1375.9
NC_020302:1241504:124909212490921250066975Corynebacterium halotolerans YIM 70093 = DSM 44683, completelipoprotein4e-1375.9
NC_014119:1059223:1082057108205710831661110Burkholderia sp. CCGE1002 chromosome chromosome 3, completeABC-type sugar transport system periplasmic component-like protein4e-1375.9
NC_016642:1913432:191343219134321914358927Pseudovibrio sp. FO-BEG1 chromosome, complete genomeperiplasmic substrate-binding protein, ABC-type sugar transporter4e-1375.9
NC_011297:290737:3016963016963027001005Dictyoglomus thermophilum H-6-12, complete genomerhamnose ABC transporter rhamnose-binding protein6e-1375.5
NC_013521:107937:110667110667111626960Sanguibacter keddieii DSM 10542, complete genomemonosaccharide-binding protein6e-1375.5
NC_000913:4307471:430913043091304310065936Escherichia coli K12, complete genomeD-allose transporter subunit2e-1273.9
NC_010468:4305105:432191943219194322854936Escherichia coli ATCC 8739, complete genomeMonosaccharide-transporting ATPase2e-1273.9
CP002516:4431235:444855644485564449491936Escherichia coli KO11, complete genomeperiplasmic binding protein/LacI transcriptional regulator2e-1273.9
NC_010473:4409492:440949244094924410427936Escherichia coli str. K-12 substr. DH10B, complete genomeD-allose transporter subunit; periplasmic-binding component of ABC superfamily2e-1273.9
AC_000091:4313167:431578543157854316720936Escherichia coli W3110 DNA, complete genomeD-allose transporter subunit2e-1273.9
NC_012759:4247865:424786542478654248800936Escherichia coli BW2952 chromosome, complete genomeD-allose transporter subunit2e-1273.9
NC_012947:4106031:412324441232444124179936Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeD-allose transporter subunit2e-1273.9
NC_012967:4289929:428992942899294290864936Escherichia coli B str. REL606 chromosome, complete genomeD-allose transporter subunit2e-1273.9
NC_016902:4431235:444855644485564449491936Escherichia coli KO11FL chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator2e-1273.9
NC_011415:4582388:458238845823884583323936Escherichia coli SE11 chromosome, complete genomeD-allose transporter subunit3e-1273.2
NC_010498:4656716:465671646567164657657942Escherichia coli SMS-3-5, complete genomeD-allose-binding periplasmic protein AlsB3e-1273.2
NC_013353:5022196:502219650221965023131936Escherichia coli O103:H2 str. 12009, complete genomeD-allose-binding periplasmic protein3e-1272.8
AP010958:5022196:502219650221965023131936Escherichia coli O103:H2 str. 12009 DNA, complete genomeD-allose-binding periplasmic protein3e-1272.8
NC_011750:4719477:471947747194774720412936Escherichia coli IAI39 chromosome, complete genomeD-allose transporter subunit5e-1272.4
NC_011742:4569683:457230145723014573236936Escherichia coli S88 chromosome, complete genomeD-allose transporter subunit5e-1272.4
NC_004431:4867648:487026648702664871207942Escherichia coli CFT073, complete genomeD-allose-binding periplasmic protein precursor5e-1272
NC_008563:4656000:465777346577734658714942Escherichia coli APEC O1, complete genomeD-allose-binding periplasmic protein precursor5e-1272
NC_008253:4541915:454383245438324544773942Escherichia coli 536, complete genomeD-allose-binding periplasmic protein precursor5e-1272
NC_012632:816000:8356568356568366871032Sulfolobus islandicus M.16.27 chromosome, complete genomeABC transporter substrate-binding protein1e-1170.9
NC_015957:3342169:3357865335786533589441080Streptomyces violaceusniger Tu 4113 chromosome, complete genomerhamnose ABC transporter periplasmic rhamnose-binding protein2e-1170.5
NC_015519:1888917:1904377190437719053991023Tepidanaerobacter sp. Re1 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator2e-1170.5
NC_016113:11500:2570925709276581950Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequenceD-ribose ABC transporter permease2e-1170.1
NC_011896:491052:4960694960694971061038Mycobacterium leprae Br4923, complete genomeputative D-ribose-binding protein4e-1169.3
NC_002677:491043:4960604960604970971038Mycobacterium leprae TN, complete genomeputative D-ribose-binding protein4e-1169.3
NC_016590:1380092:139483113948311395823993Burkholderia sp. YI23 chromosome 3, complete sequenceputative substrate binding component of ABC transporter4e-1169.3
NC_003155:6444500:6444518644451864464641947Streptomyces avermitilis MA-4680, complete genomeD-ribose ABC transporter permease protein5e-1168.9
NC_015161:1556766:156531915653191566305987Deinococcus proteolyticus MRP chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator7e-1168.6
NC_010556:2328303:234419623441962345110915Exiguobacterium sibiricum 255-15, complete genomeperiplasmic binding protein/LacI transcriptional regulator1e-1067.4
NC_012691:2146473:215675721567572157689933Tolumonas auensis DSM 9187, complete genomeperiplasmic binding protein/LacI transcriptional regulator1e-1067.4
NC_014364:3238374:324759232475923248554963Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator3e-1066.2
NC_002516:2113186:213085421308542131813960Pseudomonas aeruginosa PAO1, complete genomebinding protein component precursor of ABC ribose transporter3e-1066.2
NC_019978:2506472:2521843252184325228861044Halobacteroides halobius DSM 5150, complete genomeABC-type sugar transport system, periplasmic component3e-1066.2
NC_018644:602200:612192612192613094903Alpha proteobacterium HIMB59 chromosome, complete genomemonosaccharide ABC transporter substrate-binding protein, CUT2 family5e-1065.9
NC_006510:1921541:192787719278771928833957Geobacillus kaustophilus HTA426, complete genomesugar ABC transporter (sugar-binding protein)6e-1065.5
NC_015425:2024154:204235720423572043271915Clostridium botulinum BKT015925 chromosome, complete genomeribose ABC transporter periplasmic D-ribose-binding protein8e-1065.1
NC_014393:4612301:462552646255264626518993Clostridium cellulovorans 743B chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator9e-1064.7
NC_014328:85290:126345126345127331987Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative sugar ABC transporter periplasmic protein9e-1064.7
NC_012559:1635922:163844016384401639369930Laribacter hongkongensis HLHK9, complete genomeRbsB1e-0964.3
NC_006347:3805500:3809824380982438125472724Bacteroides fragilis YCH46, complete genometwo-component system sensor histidine kinase/response regulator hybrid2e-0963.9
NC_018665:2163713:218209821820982183012915Exiguobacterium antarcticum B7 chromosome, complete genomePeriplasmic binding protein/LacI transcriptional regulator3e-0963.2
NC_014762:2428721:244921524492152450201987Sulfuricurvum kujiense DSM 16994 chromosome, complete genomemonosaccharide ABC transporter substrate-binding protein, cut2 family3e-0963.2
NC_014150:2798000:2815641281564128166631023Brachyspira murdochii DSM 12563 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator3e-0963.2
NC_016614:686887:702059702059702937879Vibrio sp. EJY3 chromosome 2, complete sequenceD-ribose transporter subunit RbsB3e-0962.8
NC_015379:2751342:275400827540082754934927Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative transporter, periplasmic protein4e-0962.8
NC_018607:1463918:1477520147752014785421023Brachyspira pilosicoli B2904 chromosome, complete genomesugar ABC transporter periplasmic ligand-binding protein7e-0962
NC_019908:499929:5098765098765108981023Brachyspira pilosicoli P43/6/78 chromosome, complete genomesugar ABC transporter substrate-binding protein7e-0962
NC_014330:139175:1469291469291479511023Brachyspira pilosicoli 95/1000 chromosome, complete genomesugar ABC transporter periplasmic ligand-binding protein7e-0962
NC_013929:6526745:653297265329726533718747Streptomyces scabiei 87.22 chromosome, complete genomecarbohydrate-binding protein1e-0861.2
NC_021066:601029:6076556076556086951041Raoultella ornithinolytica B6, complete genomeribose-binding periplasmic protein RbsB1e-0860.8
NC_008593:1797000:181560418156041816518915Clostridium novyi NT, complete genomeribose ABC transporter, periplasmic D-ribose-binding protein1e-0860.8
NC_012559:978419:997323997323998321999Laribacter hongkongensis HLHK9, complete genomeRbsB protein1e-0860.8
NC_016512:15102:202062020621147942Propionibacterium acnes TypeIA2 P.acn17 chromosome, completeperiplasmic sugar-binding protein1e-0860.8
NC_016511:15100:202042020421145942Propionibacterium acnes TypeIA2 P.acn31 chromosome, completeperiplasmic sugar-binding protein1e-0860.8
NC_006085:15246:203502035021291942Propionibacterium acnes KPA171202, complete genomeperiplasmic sugar-binding protein2e-0860.5
NC_021177:7159654:7177869717786971798241956Streptomyces fulvissimus DSM 40593, complete genomeD-ribose ABC transporter permease protein2e-0860.5
NC_015566:2039431:206700920670092067938930Serratia sp. AS12 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator3e-0860.1
NC_014210:2747787:2749354274935427504211068Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,rhamnose ABC transporter, periplasmic rhamnose-binding protein3e-0860.1
NC_016516:15102:202062020621147942Propionibacterium acnes TypeIA2 P.acn33 chromosome, completeperiplasmic sugar-binding protein2e-0860.1
NC_014039:15236:203392033921280942Propionibacterium acnes SK137 chromosome, complete genomeribose ABC transport system, permease protein RbsC/ribose ABC transport system, periplasmic ribose-binding protein RbsB4e-0859.3
NC_002678:7004370:7024431702443170254711041Mesorhizobium loti MAFF303099, complete genomeABC transporter, binding protein5e-0858.9
NC_007759:1028977:106955510695551070553999Syntrophus aciditrophicus SB, complete genomeABC-type sugar transport system, periplasmic component5e-0858.9
NC_014838:589581:6045926045926056561065Pantoea sp. At-9b plasmid pPAT9B01, complete sequencetranscriptional regulator, LacI family5e-0858.9
NC_017954:934616:9372219372219382581038Thermogladius cellulolyticus 1633 chromosome, complete genomesugar ABC transporter periplasmic protein6e-0858.5
NC_008800:575141:5932875932875943211035Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative periplasmic solute-binding protein1e-0758.2
NC_019897:2696587:270632827063282707290963Thermobacillus composti KWC4 chromosome, complete genomesugar ABC transporter substrate-binding protein1e-0758.2
NC_009832:2596344:261688426168842617807924Serratia proteamaculans 568, complete genomeperiplasmic binding protein/LacI transcriptional regulator1e-0757.8
NC_007644:626992:637402637402638382981Moorella thermoacetica ATCC 39073, complete genomePeriplasmic binding protein/LacI transcriptional regulator1e-0757.8
NC_015224:610807:6277426277426287761035Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative periplasmic solute-binding protein1e-0757.4
NC_014364:815346:849154849154850110957Spirochaeta smaragdinae DSM 11293 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator2e-0756.6
NC_016633:2655811:266334826633482664292945Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomesugar ABC transporter periplasmic protein3e-0756.6
NC_020211:3535622:355672535567253557642918Serratia marcescens WW4, complete genomeribose ABC superfamily ATP binding cassette transporter, binding protein3e-0756.6
NC_008596:4043213:407255840725584073547990Mycobacterium smegmatis str. MC2 155, complete genomeABC transporter periplasmic-binding protein YphF3e-0756.2
NC_009484:2442923:2449820244982024508571038Acidiphilium cryptum JF-5 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator6e-0755.5
NC_015186:2719645:2726542272654227275761035Acidiphilium multivorum AIU301, complete genomesugar ABC transporter substrate-binding protein6e-0755.5
NC_005125:839000:860764860764861717954Gloeobacter violaceus PCC 7421, complete genomeperiplasmic sugar binding protein of ABC transport system8e-0755.1
NC_013205:747502:7585227585227595801059Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,ABC transporter, solute-binding, sugar transport9e-0754.7
NC_008699:3516608:3528281352828135293271047Nocardioides sp. JS614, complete genomeABC sugar transporter, periplasmic ligand binding protein1e-0654.7
NC_011283:2103500:212474121247412125655915Klebsiella pneumoniae 342 chromosome, complete genomeperiplasmic sugar-binding protein2e-0653.9
NC_006510:1901954:1910407191040719114981092Geobacillus kaustophilus HTA426, complete genomeD-xylose ABC transporter (substrate-binding protein)2e-0653.9
NC_014650:2143033:215129121512912152265975Geobacillus sp. Y4.1MC1 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator2e-0653.9
NC_009053:1895485:189800218980021898874873Actinobacillus pleuropneumoniae L20, complete genomeD-ribose-binding periplasmic protein precursor2e-0653.9
NC_006087:2292791:229279122927912293657867Leifsonia xyli subsp. xyli str. CTCB07, complete genomesugar ABC transporter, solute-binding protein2e-0653.5
NC_010939:1920781:192330219233021924174873Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeD-ribose-binding periplasmic protein precursor2e-0653.5
NC_010625:1370462:1394910139491013959531044Burkholderia phymatum STM815 plasmid pBPHY01, complete sequenceABC sugar transporter, periplasmic ligand binding protein3e-0653.1
NC_009654:4716417:4748304474830447493351032Marinomonas sp. MWYL1, complete genomeperiplasmic binding protein/LacI transcriptional regulator4e-0652.8
NC_004557:2475030:248810824881082488662555Clostridium tetani E88, complete genomeD-ribose-binding periplasmic protein4e-0652.8
NC_017218:2119964:212769721276972128647951Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeperiplasmic binding protein and sugar binding domain of the LacI family protein4e-0652.8
NC_004088:1291754:129781912978191298748930Yersinia pestis KIM, complete genomeperiplasmic solute-binding protein of ABC transporter4e-0652.8
NC_003143:2895617:290166829016682902597930Yersinia pestis CO92, complete genomeputative sugar-binding periplasmic protein4e-0652.8
NC_008149:1221637:122772012277201228649930Yersinia pestis Nepal516, complete genomesugar-binding periplasmic protein4e-0652.8
NC_017154:3094000:310740531074053108334930Yersinia pestis D106004 chromosome, complete genomeputative sugar-binding periplasmic protein4e-0652.8
NC_018531:1991218:199227719922771993245969Arthrobacter sp. Rue61a chromosome, complete genomeD-ribose-binding protein RbsB4e-0652.8
NC_017243:2079018:2085399208539920864211023Brachyspira intermedia PWS/A chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator3e-0652.8
NC_015687:1478668:149652614965261497485960Clostridium acetobutylicum DSM 1731 chromosome, complete genomeperiplasmic sugar-binding protein5e-0652.4
NC_015732:140087:147960147960148913954Spirochaeta caldaria DSM 7334 chromosome, complete genomeperiplasmic binding protein/LacI transcriptional regulator6e-0652
NC_012967:1546000:1571596157159615726181023Escherichia coli B str. REL606 chromosome, complete genomeAI2 transporter6e-0652
NC_012947:2228235:2228235222823522292571023Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completesugar ABC transporter substrate-binding protein6e-0652
NC_008541:2037793:204289820428982043854957Arthrobacter sp. FB24 chromosome 1, complete sequenceperiplasmic binding protein/LacI transcriptional regulator9e-0651.6