Pre_GI: BLASTP Hits

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Query: NC_008148:1711679:1713663 Rubrobacter xylanophilus DSM 9941, complete genome

Start: 1713663, End: 1714796, Length: 1134

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015953:5444572:5460375546037554629992625Streptomyces sp. SirexAA-E chromosome, complete genomeputative PAS/PAC sensor protein7e-33141
NC_018750:5828000:5841875584187558445202646Streptomyces venezuelae ATCC 10712, complete genomeregulatory protein1e-32141
NC_016114:4333390:4349517434951743507971281Streptomyces flavogriseus ATCC 33331 chromosome, complete genomePAS/PAC sensor protein8e-32138
NC_013510:3065000:3084646308464630867122067Thermomonospora curvata DSM 43183, complete genomeprotein serine phosphatase with GAF(s) sensor(s)9e-31134
NC_021177:7870464:7889172788917278902871116Streptomyces fulvissimus DSM 40593, complete genomeMagnesium or manganese-dependent protein phosphatase3e-30132
NC_010572:188500:1921121921121935001389Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein8e-29128
NC_003888:8569962:8581406858140685831091704Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-24113
NC_013510:1849751:1868469186846918705502082Thermomonospora curvata DSM 43183, complete genomeputative PAS/PAC sensor protein1e-22107
NC_008536:5421036:5441250544125054424371188Solibacter usitatus Ellin6076, complete genomeresponse regulator receiver modulated serine phosphatase4e-21102
NC_013595:8338619:8338619833861983417743156Streptosporangium roseum DSM 43021, complete genomeSignal transduction histidine kinase-like protein1e-20100
NC_006138:1571878:1571878157187815739772100Desulfotalea psychrophila LSv54, complete genomesimilar to ICFG protein3e-2099.8
NC_013939:1688400:1701781170178117049903210Deferribacter desulfuricans SSM1, complete genomeserine phosphatase2e-1790.5
NC_016109:5290000:5314849531484953173112463Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase2e-1790.1
NC_007604:2555000:2555003255500325563911389Synechococcus elongatus PCC 7942, complete genomeserine phosphatase8e-1788.2
NC_006576:1743500:1760393176039317617811389Synechococcus elongatus PCC 6301, complete genomehypothetical protein8e-1788.2
NC_009664:570768:5737565737565755071752Kineococcus radiotolerans SRS30216, complete genomeputative PAS/PAC sensor protein1e-1687.4
NC_018704:347948:3504003504003514101011Amphibacillus xylanus NBRC 15112, complete genomephosphoserine phosphatase RsbU2e-1687.4
NC_004193:375416:6539466539466549591014Oceanobacillus iheyensis HTE831, complete genomeindirect positive regulator of sigma-B activity2e-1687.4
NC_018750:3859127:3872413387241338745302118Streptomyces venezuelae ATCC 10712, complete genomehypothetical protein2e-1687.4
NC_010814:2217153:2238961223896122422093249Geobacter lovleyi SZ, complete genomeputative phytochrome sensor protein2e-1686.7
NC_016751:1700164:1703150170315017045621413Marinitoga piezophila KA3 chromosome, complete genomeserine phosphatase RsbU, regulator of sigma subunit3e-1686.3
NC_007484:3358000:3369303336930333715672265Nitrosococcus oceani ATCC 19707, complete genomePAS sensor, serine phosphatase RsbU regulator of sigma subunit7e-1685.1
NC_015565:2827444:2832013283201328332181206Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeprotein serine/threonine phosphatase2e-1583.6
NC_014219:567033:5670335670335680461014Bacillus selenitireducens MLS10 chromosome, complete genomeprotein serine/threonine phosphatase4e-1582.8
NC_013093:1036772:1079924107992410814801557Actinosynnema mirum DSM 43827, complete genomeprotein serine/threonine phosphatase1e-1481.3
NC_016047:637778:6377786377786387851008Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completephosphoserine phosphatase RsbU2e-1480.9
NC_019673:6394319:6454744645474464562671524Saccharothrix espanaensis DSM 44229 complete genomeResponse regulator receiver modulated serine phosphatase2e-1480.5
NC_010337:2339056:2351249235124923524331185Heliobacterium modesticaldum Ice1, complete genomeresponse regulator receiver modulated serine phosphatase3e-1480.1
NC_010162:2406976:2413825241382524162122388Sorangium cellulosum 'So ce 56', complete genomephosphoserine phosphatase3e-1479.7
NC_012108:904260:9267529267529284521701Desulfobacterium autotrophicum HRM2, complete genomeRsbP4e-1479.3
NC_014315:3207684:3219592321959232218682277Nitrosococcus watsoni C-113 chromosome, complete genomeputative PAS/PAC sensor protein5e-1479
NC_015957:115133:1151331151331177992667Streptomyces violaceusniger Tu 4113 chromosome, complete genomesignal transduction histidine kinase regulating citrate/malate metabolism6e-1479
NC_007333:1743890:1788670178867017905261857Thermobifida fusca YX, complete genomePAS:Protein phosphatase 2C-like:GAF6e-1479
NC_013960:452493:4651284651284671822055Nitrosococcus halophilus Nc4 chromosome, complete genomePAS sensor protein7e-1478.6
NC_017290:1096599:1117259111725911191661908Chlamydophila psittaci 08DC60 chromosome, complete genomeputative regulatory protein1e-1377.8
NC_014976:2735423:2735423273542327364301008Bacillus subtilis BSn5 chromosome, complete genomeserine phosphatase1e-1377.8
NC_019896:3491000:3518845351884535198521008Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeSigma factor sig regulation protein RsbU1e-1377.8
NC_014165:2081914:210025221002522101181930Thermobispora bispora DSM 43833 chromosome, complete genomeprotein serine/threonine phosphatase2e-1377
NC_016109:5290000:5311921531192153146922772Kitasatospora setae KM-6054, complete genomeputative protein kinase/phosphatase3e-1376.6
NC_013790:85889:1007111007111025821872Methanobrevibacter ruminantium M1 chromosome, complete genomeserine phosphatase3e-1376.6
NC_016582:10015558:1002419110024191100262512061Streptomyces bingchenggensis BCW-1 chromosome, complete genomemagnesium or manganese-dependent protein phosphatase6e-1375.5
NC_012796:3374911:3433254343325434344891236Desulfovibrio magneticus RS-1, complete genomehypothetical protein8e-1375.1
NC_015656:4879904:4895368489536848964921125Frankia symbiont of Datisca glomerata chromosome, complete genomeprotein serine/threonine phosphatase9e-1374.7
NC_010688:673454:6734546734546755142061Xanthomonas campestris pv. campestris, complete genomeadenylate cyclase1e-1274.7
NC_007519:791679:7947047947047962121509Desulfovibrio alaskensis G20 chromosome, complete genomeserine phosphatase2e-1274.3
NC_016010:637535:6375356375356396432109Xanthomonas axonopodis pv. citrumelo F1 chromosome, completeSerine phosphatase RsbU, regulator of sigma subunit3e-1273.6
NC_011983:508287:5207735207735230972325Agrobacterium radiobacter K84 chromosome 2, complete genometranscriptional regulator protein2e-1273.6
NC_015671:3211972:3231317323131732335992283Cellvibrio gilvus ATCC 13127 chromosome, complete genomeputative PAS/PAC sensor protein2e-1273.6
NC_007512:1162949:1181383118138311833561974Pelodictyon luteolum DSM 273, complete genomeserine phosphatase3e-1273.2
NC_007512:944941:9756209756209775511932Pelodictyon luteolum DSM 273, complete genomeserine phosphatase3e-1273.2
NC_006582:883922:8843548843548853701017Bacillus clausii KSM-K16, complete genomeindirect positive regulator of sigma-B activity3e-1272.8
NC_017271:4193000:4216781421678142188412061Xanthomonas campestris pv. raphani 756C chromosome, completeIcfG protein5e-1272.4
NC_021177:3867439:3867439386743938691661728Streptomyces fulvissimus DSM 40593, complete genomeMagnesium or manganese-dependent protein phosphatase8e-1271.6
NC_015953:3782302:3782302378230237837711470Streptomyces sp. SirexAA-E chromosome, complete genomeprotein serine/threonine phosphatase8e-1271.6
NC_013223:1763631:1767581176758117688101230Desulfohalobium retbaense DSM 5692, complete genomeputative PAS/PAC sensor protein1e-1171.2
NC_016622:170000:1881271881271893501224Azospirillum lipoferum 4B, complete genomeputative two-component response regulator2e-1170.5
NC_017955:3670670:3685066368506636871922127Modestobacter marinus, complete genometwo-component PAS/PAC sensor protein2e-1170.5
NC_003155:921494:9359539359539387272775Streptomyces avermitilis MA-4680, complete genomemagnesium or manganese-dependent protein phosphatase2e-1170.5
NC_010572:4024810:4037560403756040392991740Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein2e-1170.1
NC_010655:1808657:1810066181006618117031638Akkermansia muciniphila ATCC BAA-835, complete genomeputative PAS/PAC sensor protein3e-1169.7
NC_008011:1394777:1409027140902714110302004Lawsonia intracellularis PHE/MN1-00, complete genomeputative regulator3e-1169.7
NC_009664:4423829:4594883459488345960851203Kineococcus radiotolerans SRS30216, complete genomeStage II sporulation E family protein5e-1169.3
NC_008009:2430509:2437727243772724387521026Acidobacteria bacterium Ellin345, complete genomeserine phosphatase6e-1168.9
NC_015957:690817:7096307096307108351206Streptomyces violaceusniger Tu 4113 chromosome, complete genomeprotein serine/threonine phosphatase1e-1068.2
NC_015957:336500:3380803380803394861407Streptomyces violaceusniger Tu 4113 chromosome, complete genomeprotein serine/threonine phosphatase1e-1067.4
NC_013757:1438812:1469969146996914722812313Geodermatophilus obscurus DSM 43160, complete genomeputative PAS/PAC sensor protein2e-1067.4
NC_012796:4693500:4710180471018047113341155Desulfovibrio magneticus RS-1, complete genomeresponse regulator receiver protein3e-1066.6
NC_014377:1512217:151438815143881515113726Thermosediminibacter oceani DSM 16646 chromosome, complete genomeprotein serine/threonine phosphatase4e-1066.2
NC_013410:2691437:2693584269358426949061323Fibrobacter succinogenes subsp. succinogenes S85 chromosome,protein serine/threonine phosphatase5e-1065.9
NC_014844:3469848:3485824348582434885982775Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomePAS sensor protein5e-1065.9
NC_012121:1578190:1595479159547915964801002Staphylococcus carnosus subsp. carnosus TM300, complete genomeputative sigmaB regulation protein RsbU8e-1065.1
NC_017955:3731480:3784366378436637865642199Modestobacter marinus, complete genomehypothetical protein9e-1065.1
NC_020134:2772500:2791407279140727925461140Clostridium stercorarium subsp. stercorarium DSM 8532, completeputative phosphatase1e-0964.3
NC_003888:4523500:4526332452633245279901659Streptomyces coelicolor A3(2), complete genomehypothetical protein1e-0964.3
NC_017059:2771085:2818972281897228212362265Rhodospirillum photometricum DSM 122, complete genomeSerine phosphatase RsbU regulator sigma subunit1e-0964.3
NC_016582:1639375:1662621166262116654342814Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative regulatory protein phosphatase1e-0964.3
NC_007205:60069:7711577115784611347Candidatus Pelagibacter ubique HTCC1062, complete genomeSigma factor sigB regulation protein1e-0964.3
NC_019757:3869047:3886897388689738885701674Cylindrospermum stagnale PCC 7417, complete genomeserine phosphatase RsbU, regulator of sigma subunit3e-0963.5
NC_009925:1109770:1125246112524611263731128Acaryochloris marina MBIC11017, complete genometwo-component response regulator, putative3e-0963.2
NC_015434:6020178:6020178602017860213141137Verrucosispora maris AB-18-032 chromosome, complete genomeresponse regulator receiver modulated serine phosphatase4e-0962.8
NC_015573:569625:571222571222571938717Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeprotein serine/threonine phosphatase4e-0962.8
NC_017955:3057592:3078117307811730796641548Modestobacter marinus, complete genomePAS/PAC sensor protein6e-0962.4
NC_006510:1501487:1517620151762015203252706Geobacillus kaustophilus HTA426, complete genomehypothetical protein5e-0962.4
NC_013739:5705325:5737786573778657389641179Conexibacter woesei DSM 14684, complete genomeresponse regulator receiver modulated serine phosphatase5e-0962.4
NC_014815:3005970:3022239302223930234501212Micromonospora sp. L5 chromosome, complete genomeresponse regulator receiver modulated serine phosphatase5e-0962.4
NC_016943:2054688:2071109207110920728781770Blastococcus saxobsidens DD2, complete genomeSerine phosphatase RsbU, regulator of sigma subunit5e-0962.4
NC_014210:4053094:4073747407374740748501104Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,protein serine/threonine phosphatase5e-0962.4
NC_003155:5163382:5184516518451651859101395Streptomyces avermitilis MA-4680, complete genomemagnesium or manganese-dependent protein phosphatase9e-0961.6
NC_013510:5394432:5415681541568154194273747Thermomonospora curvata DSM 43183, complete genomemulti-sensor hybrid histidine kinase1e-0861.6
NC_018643:754104:7541047541047561042001Alpha proteobacterium HIMB5 chromosome, complete genomeCHASE2 domain-containing protein,Stage II sporulation protein E (SpoIIE)2e-0860.8
NC_010572:4585500:4587521458752145893051785Streptomyces griseus subsp. griseus NBRC 13350, complete genomehypothetical protein2e-0860.5
NC_003888:7028165:7056189705618970572921104Streptomyces coelicolor A3(2), complete genomeintegral membrane protein2e-0860.1
NC_003155:4906639:4930332493033249317801449Streptomyces avermitilis MA-4680, complete genomemagnesium or manganese-dependent protein phosphatase4e-0859.3
NC_007205:60069:6232362323645602238Candidatus Pelagibacter ubique HTCC1062, complete genomeAmmonium transporter family protein6e-0858.9
NC_013595:235931:2391562391562402351080Streptosporangium roseum DSM 43021, complete genomeSerine phosphatase RsbU regulator of sigma subunit-like protein1e-0758.2
NC_010162:1222000:1243753124375312455251773Sorangium cellulosum 'So ce 56', complete genomehypothetical protein1e-0757.8
NC_016582:7033000:7033222703322270352732052Streptomyces bingchenggensis BCW-1 chromosome, complete genomemagnesium or manganese-dependent protein phosphatase2e-0757.4
NC_021177:7870464:7884763788476378889084146Streptomyces fulvissimus DSM 40593, complete genomePAS/PAC sensor hybrid histidine kinase2e-0757.4
NC_021177:2451000:2467664246766424688091146Streptomyces fulvissimus DSM 40593, complete genomeIntegral membrane protein5e-0755.8
NC_015953:4045500:4062752406275240640951344Streptomyces sp. SirexAA-E chromosome, complete genomeresponse regulator receiver modulated serine phosphatase6e-0755.5
NC_012483:3144689:3149285314928531508861602Acidobacterium capsulatum ATCC 51196, complete genomeGAF/FHA/SpoE domain protein9e-0755.1
NC_017955:3731480:3749996374999637517651770Modestobacter marinus, complete genomehypothetical protein2e-0653.9
NC_013131:5226919:5246261524626152474481188Catenulispora acidiphila DSM 44928, complete genomeprotein serine/threonine phosphatase3e-0653.1
NC_009664:10718:2753127531288021272Kineococcus radiotolerans SRS30216, complete genomeStage II sporulation E family protein4e-0652.8
NC_009921:5508000:5508728550872855099571230Frankia sp. EAN1pec, complete genomeputative PAS/PAC sensor protein4e-0652.8