Pre_GI: BLASTN Hits

Some Help

Query: NC_008146:5106775 Mycobacterium sp. MCS, complete genome

Start: 5106775, End: 5131099, Length: 24325

Host Lineage: Mycobacterium; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Mycobacterium MCS was isolated from soil in a wood preservative-contaminated land-treatment unit where remediation of polycyclic aromatic hydrocarbon (PAH) was occurring. This isolate mineralizes small- and large-ring PAHs, in contrast to other PAH-degrading microbes. Bioremediation of PAHs offers an attractive solution to pollution clean-up because it can occur on site and at relative little cost compared to alternatives. This isolate belongs to a fast-growing group of the mycobacterium genus that is defined as Gram-positive, acid-fast, pleomorphic, non-motile rods. Bioremediation of soils contaminated with wood preservatives containing polycyclic aromatic hydrocarbons (PAHs) is desired because of their toxic, mutagenic, and carcinogenic properties. Creosote wood preservative–contaminated soils at the Champion International Superfund Site in Libby, Montana currently undergo bioremediation in a prepared-bed land treatment unit (LTU) process.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007413:1405817*1405817142811722301Anabaena variabilis ATCC 29413, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014550:25620532562053259431732265Arthrobacter arilaitensis Re117, complete genome3e-37165BLASTN svgBLASTP svg
NC_014550:20134222013422203695423533Arthrobacter arilaitensis Re117, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_008711:3701635*3701635372498023346Arthrobacter aurescens TC1, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_014657:673500*67350069431420815Caldicellulosiruptor owensensis OL chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_013131:10413240*104132401043185718618Catenulispora acidiphila DSM 44928, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_013131:43562474356247438238126135Catenulispora acidiphila DSM 44928, complete genome6e-26127BLASTN svgBLASTP svg
NC_015671:2371632*2371632239461522984Cellvibrio gilvus ATCC 13127 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007777:5087405*5087405511177224368Frankia sp. CcI3, complete genome1e-33153BLASTN svgBLASTP svg
NC_013441:27888062788806282218133376Gordonia bronchialis DSM 43247, complete genome5e-48200BLASTN svgBLASTP svg
NC_018583:953889538813461139224Gordonia sp. KTR9 plasmid pGKT3, complete sequence8e-53216BLASTN svgBLASTP svg
NC_015588:2939747*2939747296269722951Isoptericola variabilis 225 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_010617:55895455895458907030117Kocuria rhizophila DC2201, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_006087:345976*34597640567959704Leifsonia xyli subsp. xyli str. CTCB07, complete genome3e-18101BLASTN svgBLASTP svg
NC_012803:19809551980955200418223228Micrococcus luteus NCTC 2665, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_014246:876000*87600089916923170Mobiluncus curtisii ATCC 43063 chromosome, complete genome4e-24121BLASTN svgBLASTP svg
NC_008595:39144633914463393559921137Mycobacterium avium 104, complete genome0751BLASTN svgBLASTP svg
NC_009077:48103794810379483961029232Mycobacterium sp. JLS, complete genome02270BLASTN svgBLASTP svg
NC_009077:4671417*4671417469950728091Mycobacterium sp. JLS, complete genome01927BLASTN svgBLASTP svg
NC_008705:5144433*5144433517009925667Mycobacterium sp. KMS, complete genome020670BLASTN svgBLASTP svg
NC_014814:85912485912490088141758Mycobacterium sp. Spyr1 chromosome, complete genome1e-39172BLASTN svgBLASTP svg
NC_014814:13974291397429142156724139Mycobacterium sp. Spyr1 chromosome, complete genome02444BLASTN svgBLASTP svg
NC_014814:1425500*1425500144435118852Mycobacterium sp. Spyr1 chromosome, complete genome4e-104387BLASTN svgBLASTP svg
NC_007908:1328832*1328832136532136490Rhodoferax ferrireducens T118, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_018868:1352000*1352000138222930230Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_013947:613774*61377463382720054Stackebrandtia nassauensis DSM 44728 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_021177:3598700*3598700361863819939Streptomyces fulvissimus DSM 40593, complete genome2e-25125BLASTN svgBLASTP svg
NC_010572:3925803*3925803395628730485Streptomyces griseus subsp. griseus NBRC 13350, complete genome2e-25125BLASTN svgBLASTP svg
NC_018750:3661243*3661243368475823516Streptomyces venezuelae ATCC 10712, complete genome2e-25125BLASTN svgBLASTP svg
NC_015957:10403997*104039971042720123205Streptomyces violaceusniger Tu 4113 chromosome, complete genome6e-26127BLASTN svgBLASTP svg
NC_006177:2943259*2943259296594222684Symbiobacterium thermophilum IAM 14863, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007513:1900000*1900000192383823839Synechococcus sp. CC9902, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_018870:427357*42735744729619940Thermacetogenium phaeum DSM 12270 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_013530:3365742*3365742338937923638Xylanimonas cellulosilytica DSM 15894, complete genome1e-20109BLASTN svgBLASTP svg