Pre_GI: BLASTP Hits

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Query: NC_008146:861319:866367 Mycobacterium sp. MCS, complete genome

Start: 866367, End: 872744, Length: 6378

Host Lineage: Mycobacterium; Mycobacterium; Mycobacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Mycobacterium MCS was isolated from soil in a wood preservative-contaminated land-treatment unit where remediation of polycyclic aromatic hydrocarbon (PAH) was occurring. This isolate mineralizes small- and large-ring PAHs, in contrast to other PAH-degrading microbes. Bioremediation of PAHs offers an attractive solution to pollution clean-up because it can occur on site and at relative little cost compared to alternatives. This isolate belongs to a fast-growing group of the mycobacterium genus that is defined as Gram-positive, acid-fast, pleomorphic, non-motile rods. Bioremediation of soils contaminated with wood preservatives containing polycyclic aromatic hydrocarbons (PAHs) is desired because of their toxic, mutagenic, and carcinogenic properties. Creosote wood preservative–contaminated soils at the Champion International Superfund Site in Libby, Montana currently undergo bioremediation in a prepared-bed land treatment unit (LTU) process.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008705:868623:8736718736718800486378Mycobacterium sp. KMS, complete genomeconserved hypothetical protein, putative DNA helicase04094
NC_008596:1302000:1327732132773213339086177Mycobacterium smegmatis str. MC2 155, complete genomehypothetical protein02611
NC_017904:2162045:2181591218159121880436453Mycobacterium sp. MOTT36Y chromosome, complete genomeDNA helicase02544
NC_015125:1668780:1668780166878016752746495Microbacterium testaceum StLB037, complete genomesuperfamily I DNA and RNA helicase and helicase subunits01962
NC_016943:3270308:3270308327030832762265919Blastococcus saxobsidens DD2, complete genomeputative ATP-dependent helicase01410
NC_018581:2768743:2789405278940527953985994Gordonia sp. KTR9 chromosome, complete genomeSuperfamily I DNA and RNA helicase and helicase subunits0904
NC_002947:4167500:4201148420114842077716624Pseudomonas putida KT2440, complete genomeDNA helicase-related protein2e-97358
NC_007492:2203220:2209453220945322148645412Pseudomonas fluorescens PfO-1, complete genomeDNA helicase-related protein5e-95350
NC_014365:2810405:2822643282264328290716429Desulfarculus baarsii DSM 2075 chromosome, complete genomeDNA helicase related protein6e-95350
NC_015137:2582467:2596997259699726036236627Burkholderia sp. CCGE1001 chromosome 2, complete sequenceDNA helicase-like protein2e-94348
NC_008751:1043269:1062386106238610682625877Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeconserved hypothetical protein, putative DNA helicase3e-92341
NC_003902:2469500:2469862246986224765366675Xanthomonas campestris pv. campestris str. ATCC 33913, completeDNA helicase related protein2e-91338
NC_010552:752007:7597217597217663146594Burkholderia ambifaria MC40-6 chromosome 2, complete sequenceDNA helicase related protein3e-91338
NC_011761:1357799:1357799135779913643956597Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completehypothetical protein7e-91337
NC_016642:471656:4748764748764816436768Pseudovibrio sp. FO-BEG1 chromosome, complete genomehypothetical protein2e-90335
NC_007086:2477040:2502709250270925091796471Xanthomonas campestris pv. campestris str. 8004, complete genomeDNA helicase related protein4e-90334
NC_014306:3006028:3017915301791530237915877Erwinia billingiae Eb661, complete genomeSuperfamily I DNA and RNA helicase subunit1e-89333
NC_008576:357893:3653283653283712495922Magnetococcus sp. MC-1, complete genomesuperfamily I DNA and RNA helicase and helicase subunit1e-88329
NC_013173:1305916:1321479132147913273585880Desulfomicrobium baculatum DSM 4028, complete genomeconserved hypothetical protein, putative DNA helicase9e-86320
NC_012028:451982:4730084730084812878280Halorubrum lacusprofundi ATCC 49239 chromosome 2, complete genometype III restriction protein res subunit1e-83312
NC_013235:1218378:1233313123331312389165604Nakamurella multipartita DSM 44233, complete genomeputative superfamily I DNA and RNA helicase protein2e-80302
NC_016048:2678205:2686090268609026907154626Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein3e-79298
NC_005877:198522:2033562033562071833828Picrophilus torridus DSM 9790, complete genomeDNA helicase3e-78295
NC_008942:1446682:1466548146654814712664719Methanocorpusculum labreanum Z, complete genomehypothetical protein3e-78295
NC_013205:1548500:1608001160800116122124212Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,Superfamily I DNA and RNA helicase and helicase subunits-like protein1e-76290
NC_015216:2070756:2077641207764120828005160Methanobacterium sp. AL-21 chromosome, complete genomeDNA helicase-like protein2e-76288
NC_009952:997950:1009203100920310138824680Dinoroseobacter shibae DFL 12, complete genomeputative DNA helicase related protein5e-75284
NC_014408:806720:8067208067208115104791Methanothermobacter marburgensis str. Marburg chromosome, completeDNA helicase related protein1e-73280
NC_007948:1972290:2012625201262520189156291Polaromonas sp. JS666, complete genomeSuperfamily I DNA and RNA helicases and helicase subunits-like3e-73278
NC_011901:1860887:1881132188113218858594728Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completehypothetical protein7e-73277
NC_013132:893849:9126829126829173614680Chitinophaga pinensis DSM 2588, complete genomeDNA/RNA helicase8e-72273
NC_010172:480000:5091665091665153036138Methylobacterium extorquens PA1, complete genomehypothetical protein1e-71273
NC_015740:3631326:3639493363949336442654773Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeDNA/RNA helicase9e-71270
NC_013971:2408522:2417498241749824230115514Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein3e-69265
NC_013961:2370994:2379970237997023854835514Erwinia amylovora, complete genomeSuperfamily I DNA and RNA helicase and helicase subunits-like protein3e-69265
NC_014221:2392150:2407750240775024132095460Truepera radiovictrix DSM 17093 chromosome, complete genometranscription elongation factor GreA/GreB domain protein7e-69264
NC_015703:3880903:3893805389380539000416237Runella slithyformis DSM 19594 chromosome, complete genometranscription elongation factor GreA/GreB domain-containing protein6e-69264
NC_014376:3009403:3009403300940330144545052Clostridium saccharolyticum WM1 chromosome, complete genomehelicase4e-68261
NC_000853:648075:6480756480756519443870Thermotoga maritima MSB8, complete genomehypothetical protein4e-67258
NC_013642:400651:4133214133214171633843Thermotoga naphthophila RKU-10, complete genomeAAA ATPase2e-66256
NC_018000:4958637:4977255497725549828165562Sinorhizobium fredii USDA 257 chromosome, complete genomeATP-dependent helicase3e-66255
NC_010334:2090990:2090990209099020967405751Shewanella halifaxensis HAW-EB4, complete genomehypothetical protein3e-65252
NC_014310:279912:2959372959373015675631Ralstonia solanacearum PSI07 megaplasmid, complete sequenceDNA helicase-like protein1e-64250
NC_016625:1259778:1265459126545912701294671Burkholderia sp. YI23 chromosome 2, complete sequenceputative DNA helicase-like protein1e-63246
NC_011769:2542000:2549908254990825554935586Desulfovibrio vulgaris str. 'Miyazaki F', complete genomeputative superfamily I DNA and RNA helicase protein1e-62243
NC_012483:1813521:1823766182376618278334068Acidobacterium capsulatum ATCC 51196, complete genomehypothetical protein1e-62243
NC_007086:2887875:2900965290096529065715607Xanthomonas campestris pv. campestris str. 8004, complete genomeDNA helicase related protein2e-62242
NC_014774:1120383:1120383112038311257435361Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completehypothetical protein6e-62241
NC_009675:4281249:4290307429030742942933987Anaeromyxobacter sp. Fw109-5 chromosome, complete genomehypothetical protein6e-61238
NC_011884:3099488:3123213312321331283815169Cyanothece sp. PCC 7425, complete genomehypothetical protein2e-59233
NC_010943:3069082:3076745307674530788082064Stenotrophomonas maltophilia K279a, complete genomehypothetical protein2e-59233
NC_013947:3080290:3092360309236030977655406Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein3e-59232
NC_008380:2210649:2250685225068522561625478Rhizobium leguminosarum bv. viciae 3841, complete genomehypothetical protein9e-58227
NC_016629:3789554:3809766380976638149855220Desulfovibrio africanus str. Walvis Bay chromosome, completehypothetical protein5e-54214
NC_009050:212270:2462342462342526056372Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceSuperfamily I DNA and RNA helicases and helicase subunits-like protein3e-53212
NC_002516:3079850:3083485308348530861452661Pseudomonas aeruginosa PAO1, complete genomehypothetical protein1e-48197
NC_008463:2467219:2493939249393925002356297Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein1e-48196
NC_009656:2512733:2541001254100125472976297Pseudomonas aeruginosa PA7 chromosome, complete genomehypothetical protein1e-48196
NC_011770:2499432:2550676255067625569726297Pseudomonas aeruginosa LESB58, complete genomehypothetical protein2e-48196
NC_018080:2288700:2332116233211623384126297Pseudomonas aeruginosa DK2 chromosome, complete genomehypothetical protein2e-48196
NC_008060:1544920:1562247156224715685526306Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceserine/threonine protein kinase3e-46188
NC_008544:615448:6154486154486217536306Burkholderia cenocepacia HI2424 chromosome 3, complete sequenceserine/threonine protein kinase3e-46188
NC_010512:1196616:1196616119661612029126297Burkholderia cenocepacia MC0-3 chromosome 3, complete sequenceserine/threonine protein kinase7e-46187
NC_000908:160072:1758051758051791463342Mycoplasma genitalium G37, complete genomehypothetical protein5e-36155
NC_007492:2203220:2208235220823522094431209Pseudomonas fluorescens PfO-1, complete genomeDNA helicase-related protein6e-30134
NC_014328:180482:1922491922491963344086Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein2e-24116
NC_012214:1117325:1128597112859711298681272Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein2e-22109
NC_014650:1862165:1883998188399818883834386Geobacillus sp. Y4.1MC1 chromosome, complete genomehypothetical protein7e-20101
NC_015660:1896904:1907447190744719118324386Geobacillus thermoglucosidasius C56-YS93 chromosome, completehypothetical protein7e-20101
NC_016906:181254:1971891971892005723384Gordonia polyisoprenivorans VH2 chromosome, complete genomehypothetical protein5e-1998.6
NC_007517:3430237:3439706343970634450785373Geobacter metallireducens GS-15, complete genomeSuperfamily I DNA and RNA helicases and helicase subunits-like1e-1897.1
NC_013929:4549988:4582917458291745884545538Streptomyces scabiei 87.22 chromosome, complete genomehypothetical protein1e-1794
NC_008596:1302000:132315613231561323980825Mycobacterium smegmatis str. MC2 155, complete genomehypothetical protein2e-1793.6
NC_009698:120119:1256801256801297324053Clostridium botulinum A str. Hall chromosome, complete genomehypothetical protein3e-1792.4
NC_009697:120117:1256781256781297304053Clostridium botulinum A str. ATCC 19397 chromosome, completehypothetical protein3e-1792.4
NC_009495:128000:1328751328751369274053Clostridium botulinum A str. ATCC 3502 chromosome, complete genomehypothetical protein3e-1792.4
NC_014210:3248526:3248526324852632529954470Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,protein of unknown function DUF5594e-1792
NC_012563:122000:1268111268111308634053Clostridium botulinum A2 str. Kyoto, complete genomehypothetical protein5e-1792
NC_012658:125500:1303561303561344084053Clostridium botulinum Ba4 str. 657 chromosome, complete genomehypothetical protein5e-1791.7
NC_009699:122000:1276781276781317304053Clostridium botulinum F str. Langeland chromosome, complete genomehypothetical protein7e-1791.3
NC_010803:634497:6478486478486527404893Chlorobium limicola DSM 245, complete genomesuperfamily I DNA and RNA helicase subunits-like protein2e-1690.1
NC_014727:1136589:1143692114369211507327041Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,DNA helicase2e-1690.1
NC_010520:121077:1266381266381306904053Clostridium botulinum A3 str. Loch Maree, complete genomehypothetical protein3e-1689.4
NC_006361:4597718:4605548460554846089313384Nocardia farcinica IFM 10152, complete genomehypothetical protein1e-1587.4
NC_010516:127000:1326561326561367084053Clostridium botulinum B1 str. Okra, complete genomehypothetical protein1e-1587
NC_013174:2163947:2166431216643121709304500Jonesia denitrificans DSM 20603, complete genomehypothetical protein1e-1587
NC_007333:810381:8395388395388440104473Thermobifida fusca YX, complete genomesimilar to Superfamily I DNA and RNA helicases and helicase subunits2e-1586.3
NC_018532:166468:1974741974742008363363Arthrobacter sp. Rue61a plasmid p232, complete sequencehypothetical protein4e-1585.5
NC_014298:251783:270902270902271726825Halalkalicoccus jeotgali B3 plasmid 1, complete sequenceDNA binding protein -like protein8e-1584.7
NC_013441:27877:4341843418445421125Gordonia bronchialis DSM 43247, complete genomehypothetical protein9e-1584.3
NC_015222:94847:1004471004471050844638Nitrosomonas sp. AL212 chromosome, complete genomeDNA helicase, putative1e-1483.6
NC_000961:801902:8181038181038200731971Pyrococcus horikoshii OT3, complete genomeDNA-binding protein4e-1482.4
NC_014814:859124:8783568783568817243369Mycobacterium sp. Spyr1 chromosome, complete genomehypothetical protein2e-1380.1
NC_009142:5698100:5732738573273857380625325Saccharopolyspora erythraea NRRL 2338, complete genomesimilar to superfamily I DNA and RNA helicases and helicase subunits4e-1379
NC_013947:1665994:1675315167531516786443330Stackebrandtia nassauensis DSM 44728 chromosome, complete genomehypothetical protein5e-1378.6
NC_002516:3079850:3079850307985030834823633Pseudomonas aeruginosa PAO1, complete genomehypothetical protein5e-1378.6
NC_008268:1748635:1762421176242117677335313Rhodococcus sp. RHA1, complete genomepossible DNA helicase3e-1275.9
NC_013714:1376500:1404879140487914082953417Bifidobacterium dentium Bd1, complete genomeAAA family ATPase4e-1275.5
NC_013849:397947:4060154060154078111797Ferroglobus placidus DSM 10642 chromosome, complete genometype III restriction protein res subunit9e-1274.3
NC_008698:903759:9088359088359107241890Thermofilum pendens Hrk 5, complete genomeAAA ATPase1e-1173.9
NC_015942:3090275:3109116310911631136664551Acidithiobacillus ferrivorans SS3 chromosome, complete genomehypothetical protein3e-1172.8
NC_015385:2135456:2135456213545621384913036Treponema succinifaciens DSM 2489 chromosome, complete genomehypothetical protein6e-1171.6
NC_015954:1437544:1437544143754414403212778Halophilic archaeon DL31 chromosome, complete genomeCRISPR-associated protein Cas42e-1069.7
NC_016948:678939:6948656948656979963132Mycobacterium intracellulare MOTT-64 chromosome, complete genomehypothetical protein4e-1068.9
NC_006396:320853:3224483224483246732226Haloarcula marismortui ATCC 43049 chromosome I, complete sequenceDNA binding protein eukaryotic-like6e-1068.6
NC_015425:2528549:2572938257293825766063669Clostridium botulinum BKT015925 chromosome, complete genomeDNA helicase9e-1067.8
NC_016887:1949927:1957259195725919609063648Nocardia cyriacigeorgica GUH-2, complete genomehypothetical protein1e-0967.4
NC_005090:1033746:1058201105820110606482448Wolinella succinogenes DSM 1740, complete genomeATP-BINDING PROTEIN1e-0967.4
NC_008570:1143578:1147784114778411504802697Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein1e-0967.4
NC_002695:1417912:1435364143536414373011938Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-0966.6
NC_016114:648422:6719446719446766474704Streptomyces flavogriseus ATCC 33331 chromosome, complete genomesuperfamily I DNA/RNA helicase2e-0966.6
NC_016906:181254:2187152187152222273513Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative DNA helicase2e-0966.2
NC_013364:1306756:1325325132532513280062682Escherichia coli O111:H- str. 11128, complete genomeputative UvrD/REP helicase-like protein4e-0965.5
NC_002655:1103991:1123332112333211254672136Escherichia coli O157:H7 EDL933, complete genomehypothetical protein5e-0965.5
NC_009615:1305678:1305678130567813076001923Parabacteroides distasonis ATCC 8503 chromosome, complete genomehelicase8e-0964.7
NC_013361:1335166:1353740135374013564212682Escherichia coli O26:H11 str. 11368 chromosome, complete genomeUvrD/REP helicase7e-0964.7
NC_013947:3080290:3088272308827230918623591Stackebrandtia nassauensis DSM 44728 chromosome, complete genomepeptidase C14 caspase catalytic subunit p207e-0964.7
NC_020302:1241504:1253510125351012578984389Corynebacterium halotolerans YIM 70093 = DSM 44683, completesuperfamily protein I DNA/RNA helicase1e-0864.3
NC_014221:1277022:1278601127860112819273327Truepera radiovictrix DSM 17093 chromosome, complete genomeprotein of unknown function DUF4991e-0863.9
NC_013720:1605240:1630319163031916322381920Pirellula staleyi DSM 6068, complete genomeAAA ATPase2e-0863.5
NC_017093:7255652:7255652725565272578982247Actinoplanes missouriensis 431, complete genomehypothetical protein2e-0863.5
NC_009142:2480608:2491194249119424949223729Saccharopolyspora erythraea NRRL 2338, complete genomehypothetical protein2e-0863.2
NC_016906:181254:2157262157262172581533Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative DNA helicase2e-0863.2
NC_014974:404015:4190734190734224233351Thermus scotoductus SA-01 chromosome, complete genomeATPase3e-0862.8
NC_017297:122383:1279431279431305312589Clostridium botulinum F str. 230613 chromosome, complete genome5e-0862
NC_013508:2587913:2616477261647726191642688Edwardsiella tarda EIB202, complete genomesuperfamily I DNA and RNA helicase5e-0862
NC_017273:352150:3527603527603560143255Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, completeATPase (AAA+ superfamily)-like protein6e-0861.6
NC_015381:2859000:2862834286283428655932760Burkholderia gladioli BSR3 chromosome 1, complete sequenceATP-binding protein7e-0861.6
NC_003454:2113464:2113464211346421160132550Fusobacterium nucleatum subsp. nucleatum ATCC 25586, completeDNA helicase1e-0760.5
NC_012654:237175:2407082407082438603153Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequenceprotein kinase domain protein1e-0760.5
NC_013132:782846:7995357995358028703336Chitinophaga pinensis DSM 2588, complete genomesuperfamily I DNA and RNA helicase2e-0760.5
NC_015436:1758257:1770034177003417728682835Spirochaeta coccoides DSM 17374 chromosome, complete genomeDNA helicase4e-0758.9
NC_006512:1722138:1728654172865417313862733Idiomarina loihiensis L2TR, complete genomeSuperfamily I DNA/RNA helicase5e-0758.5
NC_014828:1019533:1054517105451710572762760Ethanoligenens harbinense YUAN-3 chromosome, complete genomeDNA helicase5e-0758.5
NC_009720:750612:7745077745077778033297Xanthobacter autotrophicus Py2, complete genomeAAA family ATPase1e-0657.4
NC_007925:4355413:4381145438114543861004956Rhodopseudomonas palustris BisB18, complete genomeSuperfamily I DNA and RNA helicases and helicase subunits-like1e-0657.4
NC_016604:917972:9209989209989263585361Mycobacterium rhodesiae NBB3 chromosome, complete genomeIstB-like ATP binding protein1e-0657.4
NC_015761:4355335:4360324436032443638393516Salmonella bongori NCTC 12419, complete genomehypothetical protein2e-0657
NC_009953:3509229:3512609351260935154342826Salinispora arenicola CNS-205 chromosome, complete genomeputative helicase4e-0655.5
NC_014414:1140357:1154188115418811574603273Parvularcula bermudensis HTCC2503 chromosome, complete genomehypothetical protein7e-0655.1
NC_009511:187508:1980921980922013883297Sphingomonas wittichii RW1 chromosome, complete genomeAAA ATPase7e-0655.1
NC_009049:1934398:1951458195145819547543297Rhodobacter sphaeroides ATCC 17029 chromosome 1, complete sequencehypothetical protein8e-0654.7