Query: NC_008044:3024125 Silicibacter sp. TM1040, complete genome
Start: 3024125, End: 3049099, Length: 24975
Host Lineage: Ruegeria; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria
General Information: This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_007802:179780* | 179780 | 208285 | 28506 | Jannaschia sp. CCS1, complete genome | 2e-103 | 385 | BLASTN svg | BLASTP svg |
NC_009952:3596399* | 3596399 | 3640161 | 43763 | Dinoroseobacter shibae DFL 12, complete genome | 2e-75 | 291 | BLASTN svg | BLASTP svg |
NC_016027:2047954* | 2047954 | 2110217 | 62264 | Gluconacetobacter xylinus NBRC 3288, complete genome | 6e-60 | 240 | BLASTN svg | BLASTP svg |
NC_008702:1094663* | 1094663 | 1118488 | 23826 | Azoarcus sp. BH72, complete genome | 3e-15 | 91.7 | BLASTN svg | BLASTP svg |
NC_008343:61191* | 61191 | 79560 | 18370 | Granulibacter bethesdensis CGDNIH1, complete genome | 8e-13 | 83.8 | BLASTN svg | BLASTP svg |
NC_014210:397922* | 397922 | 417599 | 19678 | Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome, | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_014924:2961970 | 2961970 | 2985169 | 23200 | Pseudoxanthomonas suwonensis 11-1 chromosome, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_015563:5162177* | 5162177 | 5186117 | 23941 | Delftia sp. Cs1-4 chromosome, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
NC_015966:2841420* | 2841420 | 2862982 | 21563 | Rhodothermus marinus SG0.5JP17-172 chromosome, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_015578:1582827* | 1582827 | 1607132 | 24306 | Treponema primitia ZAS-2 chromosome, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_008751:1851358* | 1851358 | 1873283 | 21926 | Desulfovibrio vulgaris subsp. vulgaris DP4, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_002937:1634287* | 1634287 | 1659759 | 25473 | Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_010338:4015928* | 4015928 | 4049827 | 33900 | Caulobacter sp. K31, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_015556:515641 | 515641 | 538556 | 22916 | Pseudomonas fulva 12-X chromosome, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_014931:4985500 | 4985500 | 5004777 | 19278 | Variovorax paradoxus EPS chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_002696:2829002* | 2829002 | 2855656 | 26655 | Caulobacter crescentus CB15, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_014623:10036628* | 10036628 | 10060300 | 23673 | Stigmatella aurantiaca DW4/3-1 chromosome, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_013947:1363078* | 1363078 | 1381389 | 18312 | Stackebrandtia nassauensis DSM 44728 chromosome, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_010002:2293670* | 2293670 | 2317677 | 24008 | Delftia acidovorans SPH-1, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
NC_010645:3720501* | 3720501 | 3745499 | 24999 | Bordetella avium 197N, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_014722:1191380* | 1191380 | 1214342 | 22963 | Burkholderia rhizoxinica HKI 454, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_015740:636667* | 636667 | 659775 | 23109 | Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_012029:1525929* | 1525929 | 1554306 | 28378 | Halorubrum lacusprofundi ATCC 49239 chromosome 1, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_009434:608765 | 608765 | 682099 | 73335 | Pseudomonas stutzeri A1501, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_008543:323773 | 323773 | 347099 | 23327 | Burkholderia cenocepacia HI2424 chromosome 2, complete sequence | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_003919:1491001 | 1491001 | 1512552 | 21552 | Xanthomonas axonopodis pv. citri str. 306, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |