Pre_GI: BLASTP Hits

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Query: NC_008044:136844:153682 Silicibacter sp. TM1040, complete genome

Start: 153682, End: 154578, Length: 897

Host Lineage: Ruegeria; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011420:365505:365505365505366332828Rhodospirillum centenum SW, complete genomesigma-B modulator protein8e-26117
NC_019896:3491000:352063835206383521462825Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeModulator protein RsbR6e-25114
NC_019673:6394319:645032664503266451171846Saccharothrix espanaensis DSM 44229 complete genomeAnti-sigma-factor antagonist2e-24113
NC_014924:2517068:252303525230352523886852Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeanti-sigma-factor antagonist9e-24110
NC_015957:690817:706890706890707747858Streptomyces violaceusniger Tu 4113 chromosome, complete genomeanti-sigma-factor antagonist3e-23109
NC_010505:5525461:554987755498775550752876Methylobacterium radiotolerans JCM 2831, complete genomeanti-sigma-factor antagonist2e-22106
NC_018704:347948:348751348751349620870Amphibacillus xylanus NBRC 15112, complete genomemodulator protein RsbR2e-21103
NC_004193:375416:652243652243653112870Oceanobacillus iheyensis HTE831, complete genomepositive regulator of sigma-B activity2e-1996.7
NC_016940:3696570:369803236980323698667636Saprospira grandis str. Lewin chromosome, complete genomeanti-anti-sigma regulatory factor4e-1995.5
NC_014657:473479:485782485782486474693Caldicellulosiruptor owensensis OL chromosome, complete genomeanti-sigma-factor antagonist2e-1893.2
NC_010162:9502480:9518094951809495231905097Sorangium cellulosum 'So ce 56', complete genomeprotein kinase4e-1685.5
NC_010162:3177324:3178645317864531808342190Sorangium cellulosum 'So ce 56', complete genomeLacI family transcription regulator7e-1684.7
NC_010162:2406976:2419163241916324205211359Sorangium cellulosum 'So ce 56', complete genomepositive regulator of sigma-B1e-1480.9
NC_010162:11908749:1191809611918096119230604965Sorangium cellulosum 'So ce 56', complete genomeprotein kinase1e-1480.5
NC_015634:2991669:301204930120493012873825Bacillus coagulans 2-6 chromosome, complete genomeanti-sigma-factor antagonist1e-1377.4
NC_019896:3491000:352026835202683520633366Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeAntagonist protein RsbS1e-1273.9
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome6e-1271.6
NC_009725:692237:717460717460718344885Bacillus amyloliquefaciens FZB42, complete genomeYetI6e-1271.6
NC_019842:680000:707185707185708051867Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,hypothetical protein6e-1271.6
NC_010162:7824878:7843690784369078447571068Sorangium cellulosum 'So ce 56', complete genomehypothetical protein1e-1170.9
UCMB5137:303641:326008326008326898891Bacillus atrophaeus UCMB-5137YetI1e-1170.5
NC_020272:3245834:324583432458343246700867Bacillus amyloliquefaciens IT-45, complete genomepositive regulator of sigma-B activity2e-1170.5
NC_010424:697187:727373727373728131759Candidatus Desulforudis audaxviator MP104C, complete genomeanti-sigma-factor antagonist2e-1170.1
NC_016023:1083826:1104502110450211055211020Bacillus coagulans 36D1 chromosome, complete genomeanti-sigma-factor antagonist1e-1067.4
NC_014551:691594:712981712981713847867Bacillus amyloliquefaciens DSM 7, complete genomeSulphate transporter/antisigma-factor1e-1067.4
NC_017188:635901:656305656305657171867Bacillus amyloliquefaciens TA208 chromosome, complete genomeSulphate transporter/antisigma-factor1e-1067.4
NC_017191:641923:662327662327663193867Bacillus amyloliquefaciens XH7 chromosome, complete genomeRsbR protein1e-1067.4
NC_004193:375416:653117653117653473357Oceanobacillus iheyensis HTE831, complete genomenegative regulator of sigma-B activity2e-1066.6
NC_013891:1861294:187687318768731877688816Listeria seeligeri serovar 1/2b str. SLCC3954, complete genomeSTAS domain protein4e-1065.9
NC_018704:347948:349625349625349981357Amphibacillus xylanus NBRC 15112, complete genomeantagonist protein RsbS4e-1065.9
NC_002973:1877905:189805718980571898881825Listeria monocytogenes str. 4b F2365, complete genomeSTAS domain protein4e-1065.9
NC_020126:3979792:398770839877083988199492Myxococcus stipitatus DSM 14675, complete genomeanti-anti sigma factor protein4e-1065.9
NC_016935:7426389:7441570744157074428921323Paenibacillus mucilaginosus 3016 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer7e-1064.7
NC_015690:7334786:7349481734948173508031323Paenibacillus mucilaginosus KNP414 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer7e-1064.7
NC_020388:578500:6090006090006104781479Natronomonas moolapensis 8.8.11 complete genometransducer protein HemAT1e-0964.3
NC_003210:1904152:191868119186811919505825Listeria monocytogenes EGD-e, complete genomehypothetical protein2e-0963.5
NC_013768:1983711:200386720038672004691825Listeria monocytogenes 08-5923, complete genomehypothetical protein2e-0963.5
NC_003212:1958500:197308519730851973909825Listeria innocua Clip11262, complete genomehypothetical protein2e-0963.5
NC_011660:724711:724711724711725535825Listeria monocytogenes HCC23 chromosome, complete genomestas domain protein4e-0962
NC_010424:697187:728121728121728483363Candidatus Desulforudis audaxviator MP104C, complete genomeanti-sigma-factor antagonist7e-0961.6
NC_010162:7620000:7620592762059276230152424Sorangium cellulosum 'So ce 56', complete genomeputative sugar regulator8e-0961.2
NC_009523:5438000:545568254556825455924243Roseiflexus sp. RS-1 chromosome, complete genome1e-0860.8
NC_013791:1507943:151022515102251510995771Bacillus pseudofirmus OF4 chromosome, complete genomemethyl-accepting chemotaxis sensory transducer with Pas/Pac sensor2e-0756.2
NC_015957:690817:707744707744708154411Streptomyces violaceusniger Tu 4113 chromosome, complete genomeanti-sigma-factor antagonist8e-0754.7
NC_008044:136844:153323153323153679357Silicibacter sp. TM1040, complete genomeanti-sigma-factor antagonist8e-0754.7
NC_008555:1874878:189264018926401893461822Listeria welshimeri serovar 6b str. SLCC5334, complete genomeSTAS domain protein1e-0653.9
NC_019673:6394319:645117164511716451536366Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein2e-0653.5
NC_019897:700332:750372750372751370999Thermobacillus composti KWC4 chromosome, complete genomemethyl-accepting chemotaxis protein7e-0651.6