Pre_GI: BLASTN Hits

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Query: NC_007953:353496 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 353496, End: 371599, Length: 18104

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_007651:3719191*3719191374181722627Burkholderia thailandensis E264 chromosome I, complete sequence0922BLASTN svgBLASTP svg
NC_007651:3560652*3560652359749336842Burkholderia thailandensis E264 chromosome I, complete sequence0922BLASTN svgBLASTP svg
NC_007651:3064530*30645303173670109141Burkholderia thailandensis E264 chromosome I, complete sequence0922BLASTN svgBLASTP svg
NC_007650:42074542074544753126787Burkholderia thailandensis E264 chromosome II, complete sequence0922BLASTN svgBLASTP svg
NC_010086:18163781816378188976873391Burkholderia multivorans ATCC 17616 chromosome 2, complete0914BLASTN svgBLASTP svg
NC_010805:57570957570964147565767Burkholderia multivorans ATCC 17616 chromosome 2, complete0914BLASTN svgBLASTP svg
NC_010508:19806891980689200677326085Burkholderia cenocepacia MC0-3 chromosome 1, complete sequence0914BLASTN svgBLASTP svg
NC_008061:25820002582000260842826429Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence0906BLASTN svgBLASTP svg
NC_008543:26668462666846268814221297Burkholderia cenocepacia HI2424 chromosome 2, complete sequence0906BLASTN svgBLASTP svg
NC_010515:67800067800069562617627Burkholderia cenocepacia MC0-3 chromosome 2, complete sequence0906BLASTN svgBLASTP svg
NC_010805:530876*53087656144030565Burkholderia multivorans ATCC 17616 chromosome 2, complete0906BLASTN svgBLASTP svg
NC_010086:1907959*1907959194027532317Burkholderia multivorans ATCC 17616 chromosome 2, complete0906BLASTN svgBLASTP svg
NC_010804:25186952518695254148822794Burkholderia multivorans ATCC 17616 chromosome 1, complete0890BLASTN svgBLASTP svg
NC_010087:376918*37691844748870571Burkholderia multivorans ATCC 17616 chromosome 3, complete0866BLASTN svgBLASTP svg
NC_010551:41548741548744051025024Burkholderia ambifaria MC40-6 chromosome 1, complete sequence0775BLASTN svgBLASTP svg
NC_007434:19230001923000195531232313Burkholderia pseudomallei 1710b chromosome I, complete sequence1e-103385BLASTN svgBLASTP svg
NC_014722:16479781647978167820630229Burkholderia rhizoxinica HKI 454, complete genome3e-82313BLASTN svgBLASTP svg
NC_009140:121107*12110714459223486Salmonella enterica enterica sv Newport str. SL254, complete2e-49204BLASTN svgBLASTP svg
NC_007347:24219422421942244414322202Ralstonia eutropha JMP134 chromosome 1, complete sequence2e-46194BLASTN svgBLASTP svg
NC_010512:86693286693289209925168Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence2e-43184BLASTN svgBLASTP svg
NC_010512:110932*11093213790426973Burkholderia cenocepacia MC0-3 chromosome 3, complete sequence2e-43184BLASTN svgBLASTP svg
NC_010529:29650029650034723950740Cupriavidus taiwanensis plasmid pRALTA, complete sequence1e-41178BLASTN svgBLASTP svg
NC_007651:72952*7295214574172790Burkholderia thailandensis E264 chromosome I, complete sequence8e-40172BLASTN svgBLASTP svg
NC_012856:737170*73717079740260233Ralstonia pickettii 12D chromosome 1, complete genome1e-38168BLASTN svgBLASTP svg
NC_012856:112296322963Ralstonia pickettii 12D chromosome 1, complete genome1e-38168BLASTN svgBLASTP svg
NC_003296:55683655683661181954984Ralstonia solanacearum GMI1000 plasmid pGMI1000MP, complete8e-37163BLASTN svgBLASTP svg
NC_003295:27173627173629326221527Ralstonia solanacearum GMI1000, complete genome8e-37163BLASTN svgBLASTP svg
NC_010551:20079262007926203080722882Burkholderia ambifaria MC40-6 chromosome 1, complete sequence8e-34153BLASTN svgBLASTP svg
NC_008061:18642821864282188910424823Burkholderia cenocepacia AU 1054 chromosome 2, complete sequence5e-32147BLASTN svgBLASTP svg
NC_008543:58212958212961104528917Burkholderia cenocepacia HI2424 chromosome 2, complete sequence5e-32147BLASTN svgBLASTP svg
NC_014924:2840310*2840310286007019761Pseudoxanthomonas suwonensis 11-1 chromosome, complete genome2e-31145BLASTN svgBLASTP svg
NC_007973:49960649960652396824363Ralstonia metallidurans CH34 chromosome 1, complete sequence3e-30141BLASTN svgBLASTP svg
NC_015563:3979500*3979500400273623237Delftia sp. Cs1-4 chromosome, complete genome1e-29139BLASTN svgBLASTP svg
NC_015563:35119513511951354146929519Delftia sp. Cs1-4 chromosome, complete genome1e-29139BLASTN svgBLASTP svg
NC_015186:53572753572755722721501Acidiphilium multivorum AIU301, complete genome4e-23117BLASTN svgBLASTP svg
NC_007794:15044491504449153289128443Novosphingobium aromaticivorans DSM 12444, complete genome2e-18101BLASTN svgBLASTP svg
NC_007952:32833943283394332059937206Burkholderia xenovorans LB400 chromosome 2, complete sequence2e-18101BLASTN svgBLASTP svg
NC_015186:347346*34734637448527140Acidiphilium multivorum AIU301, complete genome2e-18101BLASTN svgBLASTP svg
NC_007651:2639553*2639553269172452172Burkholderia thailandensis E264 chromosome I, complete sequence1e-1799.6BLASTN svgBLASTP svg
NC_007953:31487231487234061825747Burkholderia xenovorans LB400 chromosome 3, complete sequence4e-1797.6BLASTN svgBLASTP svg
NC_007951:20873852087385211670629322Burkholderia xenovorans LB400 chromosome 1, complete sequence2e-1695.6BLASTN svgBLASTP svg
NC_015563:42061124206112422876622655Delftia sp. Cs1-4 chromosome, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_007643:95536295536297459919238Rhodospirillum rubrum ATCC 11170, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_003047:3202125*3202125322912727003Sinorhizobium meliloti 1021, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_014006:2999500*2999500304199842499Sphingobium japonicum UT26S chromosome 1, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_015382:17221317221319334021128Burkholderia gladioli BSR3 plasmid bgla_1p, complete sequence3e-0867.9BLASTN svgBLASTP svg
NC_008390:40731540731543675629442Burkholderia cepacia AMMD chromosome 1, complete sequence1e-0765.9BLASTN svgBLASTP svg
NC_008268:57456205745620576709921480Rhodococcus sp. RHA1, complete genome1e-0765.9BLASTN svgBLASTP svg
NC_009952:2381601*2381601241824736647Dinoroseobacter shibae DFL 12, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_015733:3736104*37361043837697101594Pseudomonas putida S16 chromosome, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_015733:864959*86495989931634358Pseudomonas putida S16 chromosome, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_015594:16084816084817873017883Sphingobium chlorophenolicum L-1 chromosome chromosome 2, complete2e-0661.9BLASTN svgBLASTP svg
NC_016027:12385312385315601332161Gluconacetobacter xylinus NBRC 3288, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_016027:1401500*1401500141909917600Gluconacetobacter xylinus NBRC 3288, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_016027:16471101647110169572448615Gluconacetobacter xylinus NBRC 3288, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_016027:17763001776300179534419045Gluconacetobacter xylinus NBRC 3288, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_016027:1851737*1851737188759935863Gluconacetobacter xylinus NBRC 3288, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_016027:2047954*2047954211021762264Gluconacetobacter xylinus NBRC 3288, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_018581:49929524992952501689423943Gordonia sp. KTR9 chromosome, complete genome8e-0660BLASTN svgBLASTP svg