Pre_GI: BLASTP Hits

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Query: NC_007953:938346:955359 Burkholderia xenovorans LB400 chromosome 3, complete sequence

Start: 955359, End: 956207, Length: 849

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008148:792610:805439805439806221783Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, IclR family2e-26119
NC_012880:2425330:243403424340342434825792Dickeya dadantii Ech703, complete genometranscriptional regulator, IclR family8e-24110
NC_007644:416000:418409418409419215807Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, IclR family1e-23110
NC_012912:2216749:223158522315852232376792Dickeya zeae Ech1591, complete genometranscriptional regulator, IclR family1e-22107
NC_014666:1601972:160197216019721602739768Frankia sp. EuI1c chromosome, complete genometranscriptional regulator, IclR family4e-22105
NC_014500:2589089:259686025968602597651792Dickeya dadantii 3937 chromosome, complete genomeDNA-binding transcriptional regulatory protein KdgR4e-22105
NC_020134:845164:851861851861852637777Clostridium stercorarium subsp. stercorarium DSM 8532, completepectin degradation repressor protein KdgR7e-22104
NC_011001:163813:181278181278182174897Burkholderia cenocepacia J2315 chromosome 2, complete sequencetranscriptional regulator KdgR2e-2099.8
NC_013743:505842:527387527387528151765Haloterrigena turkmenica DSM 5511, complete genometranscriptional regulator, IclR family6e-2098.2
NC_015589:2447132:244890124489012449674774Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator IclR2e-1996.7
NC_015589:2281054:228220522822052283017813Desulfotomaculum ruminis DSM 2154 chromosome, complete genometranscriptional regulator IclR3e-1995.9
NC_008593:640000:648290648290649051762Clostridium novyi NT, complete genometranscription regulator (IclR family) BH21371e-1894
NC_013510:5394432:540096854009685401714747Thermomonospora curvata DSM 43183, complete genometranscriptional regulator, IclR family1e-1894
NC_018870:484000:489181489181489951771Thermacetogenium phaeum DSM 12270 chromosome, complete genomeHTH-type transcriptional regulator1e-1893.6
NC_015949:428923:438325438325439119795Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeIclR family transcriptional regulator3e-1892.4
NC_015949:47414:557195571956513795Caldicellulosiruptor lactoaceticus 6A chromosome, complete genomeIclR family transcriptional regulator3e-1892.4
NC_013757:3012130:301834030183403019140801Geodermatophilus obscurus DSM 43160, complete genometranscriptional regulator, IclR family5e-1891.7
NC_003888:6853107:686865768686576869469813Streptomyces coelicolor A3(2), complete genometranscriptional regulator for glyoxylate bypass1e-1790.9
NC_007503:1111457:113341811334181134203786Carboxydothermus hydrogenoformans Z-2901, complete genometranscriptional regulator, IclR family1e-1790.5
NC_007644:362000:379800379800380564765Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, IclR family1e-1790.5
NC_014532:2298628:230572923057292306538810Halomonas elongata DSM 2581, complete genometranscriptional regulator KdgR2e-1790.1
NC_016642:1990684:2006015200601520077391725Pseudovibrio sp. FO-BEG1 chromosome, complete genomeSMP-30/Gluconolaconase/LRE-like region2e-1789.7
NC_009655:1626466:163827816382781639075798Actinobacillus succinogenes 130Z chromosome, complete genometranscriptional regulator IclR3e-1789
NC_014657:2236193:225991522599152260712798Caldicellulosiruptor owensensis OL chromosome, complete genometranscriptional regulator, iclr family4e-1788.6
NC_011830:4645453:465649246564924657265774Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, IclR family7e-1787.8
NC_014392:2311243:231796223179622318795834Caldicellulosiruptor obsidiansis OB47 chromosome, complete genometranscriptional regulator, IclR family7e-1787.8
NC_004460:973738:987891987891988673783Vibrio vulnificus CMCP6 chromosome II, complete sequenceTranscriptional regulator1e-1687.4
NC_013744:462520:469728469728470492765Haloterrigena turkmenica DSM 5511 plasmid pHTUR01, completetranscriptional regulator, IclR family1e-1687
NC_015732:684000:686748686748687509762Spirochaeta caldaria DSM 7334 chromosome, complete genomeIclR family transcriptional regulator2e-1686.7
NC_014721:2043910:204995520499552050749795Caldicellulosiruptor kristjanssonii 177R1B chromosome, completetranscriptional regulator, iclr family4e-1685.5
NC_014652:163347:170037170037170810774Caldicellulosiruptor hydrothermalis 108 chromosome, completetranscriptional regulator, iclr family7e-1684.7
NC_019978:2532640:254798025479802548762783Halobacteroides halobius DSM 5150, complete genometranscriptional regulator7e-1684.7
NC_016943:1560000:156831215683121569094783Blastococcus saxobsidens DD2, complete genomeIclR family transcriptional regulator8e-1684.3
NC_005139:518760:535254535254536063810Vibrio vulnificus YJ016 chromosome I, complete sequencetranscriptional regulator9e-1684.3
NC_013967:1967896:197330819733081974072765Haloferax volcanii DS2 chromosome, complete genomeArcR family transcription regulator9e-1684.3
NC_016584:593954:606783606783607556774Desulfosporosinus orientis DSM 765 chromosome, complete genometranscriptional regulator2e-1583.2
NC_004337:3590323:372325937232593724107849Shigella flexneri 2a str. 301, complete genomeputative regulator2e-1480.1
NC_000913:272071:287628287628288386759Escherichia coli K12, complete genomeCP4-6 prophage; predicted DNA-binding transcriptional regulator2e-1479.7
AC_000091:273325:287628287628288386759Escherichia coli W3110 DNA, complete genomepredicted DNA-binding transcriptional regulator2e-1479.7
NC_014121:677799:677799677799678557759Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completephage predicted DNA-binding transcriptional regulator4e-1479
NC_019962:1750497:186400218640021864754753Natrinema pellirubrum DSM 15624, complete genometranscriptional regulator5e-1478.6
NC_016514:506611:509638509638510396759Enterobacter cloacae EcWSU1 chromosome, complete genomeprotein YagI1e-1377.4
NC_016582:3563156:357822535782253578947723Streptomyces bingchenggensis BCW-1 chromosome, complete genometranscriptional regulator2e-1376.3
NC_015658:1:4242809768Halopiger xanaduensis SH-6 plasmid pHALXA01, complete sequenceIclR family transcriptional regulator3e-1375.9
NC_006087:28490:625956259563383789Leifsonia xyli subsp. xyli str. CTCB07, complete genometranscriptional regulator, IclR family4e-1375.5
NC_005126:142500:146503146503147273771Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein8e-1374.3
NC_009921:3384116:340073634007363401452717Frankia sp. EAN1pec, complete genometranscriptional regulator, IclR family1e-1273.9
NC_014206:1618988:162671116267111627487777Geobacillus sp. C56-T3 chromosome, complete genomeIclR family transcriptional regulator1e-1273.9
NC_018581:759932:768443768443769318876Gordonia sp. KTR9 chromosome, complete genomeTranscriptional regulator1e-1273.9
NC_015573:813000:839785839785840549765Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeIclR family transcriptional regulator2e-1273.6
NC_016943:4194002:419849841984984199286789Blastococcus saxobsidens DD2, complete genomeputative HTH-type transcriptional repressor allR2e-1273.6
NC_006513:1949751:196276819627681963598831Azoarcus sp. EbN1, complete genometranscriptional regulatory protein2e-1273.2
NC_018000:1852691:187154618715461872355810Sinorhizobium fredii USDA 257 chromosome, complete genomeacetate operon repressor2e-1273.2
NC_020302:146807:162161162161162958798Corynebacterium halotolerans YIM 70093 = DSM 44683, completeIclR family transcriptional regulator2e-1273.2
NC_019974:3013338:301888230188823019688807Natronococcus occultus SP4, complete genometranscriptional regulator2e-1273.2
NC_006510:1995916:201138620113862012162777Geobacillus kaustophilus HTA426, complete genometranscriptional regulator2e-1273.2
NC_002678:5060670:507867250786725079481810Mesorhizobium loti MAFF303099, complete genomehypothetical protein2e-1272.8
NC_010718:2860096:287722228772222877980759Natranaerobius thermophilus JW/NM-WN-LF, complete genometranscriptional regulator, IclR family4e-1272
NC_009485:1222697:124249912424991243314816Bradyrhizobium sp. BTAi1 chromosome, complete genomeIclR family transcriptional regulator6e-1271.6
NC_013093:4890557:490830549083054909054750Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, IclR family6e-1271.6
NC_013922:799186:817920817920818738819Natrialba magadii ATCC 43099 chromosome, complete genometranscriptional regulator, IclR family7e-1271.2
NC_013524:314814:320777320777321589813Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genometranscriptional regulator, IclR family7e-1271.2
NC_015844:5375784:537986353798635380654792Zobellia galactanivorans, complete genomeIclR-type transcriptional regulator8e-1271.2
NC_007951:1928906:194549319454931946338846Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, IclR family1e-1170.9
NC_018644:1197897:121172112117211212491771Alpha proteobacterium HIMB59 chromosome, complete genometranscriptional regulator, IclR family,transcriptional regulator, IclR family1e-1170.5
NC_016947:1480282:148352714835271484252726Mycobacterium intracellulare MOTT-02 chromosome, complete genomeregulatory protein, IclR2e-1170.1
NC_012691:1250385:127547512754751276257783Tolumonas auensis DSM 9187, complete genometranscriptional regulator, IclR family2e-1169.7
NC_019974:1184871:123228012322801233062783Natronococcus occultus SP4, complete genometranscriptional regulator3e-1169.3
NC_010718:1229355:122935512293551230158804Natranaerobius thermophilus JW/NM-WN-LF, complete genometranscriptional regulator, IclR family3e-1168.9
NC_015565:2027279:204943020494302050236807Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeIclR family transcriptional regulator4e-1168.9
NC_007963:317291:335808335808336599792Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, IclR family7e-1167.8
NC_015844:5375784:538906253890625389859798Zobellia galactanivorans, complete genomeIclR-type transcriptional regulator9e-1167.8
NC_014532:3479674:347967434796743480453780Halomonas elongata DSM 2581, complete genometranscriptional regulator, IclR family1e-1067
NC_008010:105665:110677110677111552876Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencetranscriptional regulator, IclR family1e-1067
NC_015957:5310000:532864653286465329404759Streptomyces violaceusniger Tu 4113 chromosome, complete genomeIclR family transcriptional regulator2e-1067
NC_008268:3162824:3164996316499631666031608Rhodococcus sp. RHA1, complete genomeprobable transcriptional regulator, IclR family2e-1067
NC_010997:830500:836841836841837644804Rhizobium etli CIAT 652 plasmid pC, complete sequenceputative transcriptional regulator protein, IclR family3e-1066.2
CP002797:4603787:461008346100834610847765Escherichia coli NA114, complete genomePutative transcriptional regulator, IclR family3e-1066.2
NC_010170:3944228:399148239914823992261780Bordetella petrii, complete genometranscriptional regulator, IclR family3e-1066.2
NC_014974:1076565:109702010970201097802783Thermus scotoductus SA-01 chromosome, complete genomeIclR family transcriptional regulator5e-1065.1
NC_016943:1560000:157046615704661571323858Blastococcus saxobsidens DD2, complete genomeputative transcription regulator, IclR family5e-1065.1
NC_015563:4024450:404624740462474047149903Delftia sp. Cs1-4 chromosome, complete genomeIclR family transcriptional regulator5e-1065.1
NC_011666:1572487:157832815783281579116789Methylocella silvestris BL2, complete genometranscriptional regulator, IclR family6e-1065.1
NC_016860:4024000:403866040386604039412753Salmonella enterica subsp. enterica serovar Typhimurium strputative HTH-type transcriptional regulator yfaX6e-1064.7
NC_010002:3465509:346550934655093466300792Delftia acidovorans SPH-1, complete genometranscriptional regulator, IclR family7e-1064.7
NC_015944:10500:256442564426579936Haloarcula hispanica ATCC 33960 plasmid pHH400, complete sequencetranscription regulator1e-0963.9
NC_007952:3283394:331593333159333316799867Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, IclR family1e-0963.9
NC_013745:371322:372414372414373184771Haloterrigena turkmenica DSM 5511 plasmid pHTUR02, completetranscriptional regulator, IclR family1e-0963.5
NC_017186:361444:400705400705401463759Amycolatopsis mediterranei S699 chromosome, complete genomeIclR family transcriptional regulator2e-0963.2
NC_010473:247429:2617322617322639362205Escherichia coli str. K-12 substr. DH10B, complete genome2e-0963.2
NC_014318:381384:400659400659401450792Amycolatopsis mediterranei U32 chromosome, complete genomeIclR family transcriptional regulator2e-0963.2
NC_007948:360199:390220390220391011792Polaromonas sp. JS666, complete genometranscriptional regulator, IclR family2e-0963.2
NC_008010:105665:109770109770110609840Deinococcus geothermalis DSM 11300 plasmid 1, complete sequencetranscriptional regulator, IclR family2e-0963.2
NC_013967:1967896:197001819700181970779762Haloferax volcanii DS2 chromosome, complete genomeArcR family transcription regulator2e-0962.8
NC_018691:198909:215686215686216465780Alcanivorax dieselolei B5 chromosome, complete genomeBeta-ketoadipate pathway transcriptional regulator, PcaR/PcaU/PobR family4e-0962
NC_020209:397376:398832398832399611780Pseudomonas poae RE*1-1-14, complete genomeputative regulatory protein5e-0962
NC_010501:908000:908004908004908786783Pseudomonas putida W619, complete genometranscriptional regulator, IclR family5e-0961.6
NC_013929:5850599:5866255586625558680181764Streptomyces scabiei 87.22 chromosome, complete genomeIclR family transcriptional regulator8e-0961.2
NC_016633:14000:329083290833870963Sphaerochaeta pleomorpha str. Grapes chromosome, complete genometranscriptional regulator9e-0960.8
NC_016884:2701217:271982827198282720604777Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeIclR family transcriptional regulator1e-0860.8
NC_016641:2476634:247877124787712479514744Paenibacillus terrae HPL-003 chromosome, complete genometranscriptional regulator1e-0860.8
NC_002927:506183:544903544903545700798Bordetella bronchiseptica RB50, complete genomeputative transcriptional regulator1e-0860.8
NC_013729:4871430:488413648841364884891756Kribbella flavida DSM 17836, complete genometranscriptional regulator, IclR family1e-0860.5
NC_009512:5920960:593641859364185937254837Pseudomonas putida F1, complete genomeregulatory protein, IclR1e-0860.5
NC_009792:4693152:471779447177944718549756Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-0860.5
NC_002928:507749:543562543562544359798Bordetella parapertussis 12822, complete genomeputative transcriptional regulator1e-0860.5
NC_012912:4071859:409679440967944097600807Dickeya zeae Ech1591, complete genometranscriptional regulator, IclR family2e-0860.1
NC_008043:499399:513488513488514279792Silicibacter sp. TM1040 mega plasmid, complete sequencetranscriptional regulator, IclR family2e-0860.1
NC_014931:5573942:559204755920475592841795Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, IclR family2e-0860.1
NC_019974:1184871:119823511982351198999765Natronococcus occultus SP4, complete genometranscriptional regulator2e-0860.1
NC_016604:3137694:314993631499363150736801Mycobacterium rhodesiae NBB3 chromosome, complete genometranscriptional regulator2e-0860.1
NC_014323:625155:639729639729640526798Herbaspirillum seropedicae SmR1 chromosome, complete genometranscription regulator protein2e-0859.7
NC_008699:2260606:228254222825422283318777Nocardioides sp. JS614, complete genomeregulatory proteins, IclR2e-0859.7
NC_014623:1633889:163496616349661635784819Stigmatella aurantiaca DW4/3-1 chromosome, complete genometranscriptional regulator3e-0859.3
NC_008726:494769:503943503943504749807Mycobacterium vanbaalenii PYR-1, complete genomeregulatory proteins, IclR4e-0858.9
NC_009338:603663:622995622995623876882Mycobacterium gilvum PYR-GCK chromosome, complete genomeregulatory protein IclR5e-0858.5
NC_010524:4788753:480841648084164809255840Leptothrix cholodnii SP-6, complete genometranscriptional regulator, IclR family4e-0858.5
NC_013929:1670402:167536316753631676148786Streptomyces scabiei 87.22 chromosome, complete genometranscriptional regulator6e-0858.2
NC_008146:1748026:175758017575801758473894Mycobacterium sp. MCS, complete genometranscriptional regulator, IclR family1e-0757.8
NC_009077:1687304:169721316972131698106894Mycobacterium sp. JLS, complete genomeregulatory proteins, IclR1e-0757.8
NC_008705:1752180:176173417617341762627894Mycobacterium sp. KMS, complete genomeregulatory proteins, IclR1e-0757.8
NC_014814:132404:141615141615142415801Mycobacterium sp. Spyr1 chromosome, complete genomeTranscriptional regulator PhtR9e-0857.8
NC_015563:2702787:271230927123092713079771Delftia sp. Cs1-4 chromosome, complete genomeIclR family transcriptional regulator9e-0857.8
NC_009142:1701000:171626517162651717011747Saccharopolyspora erythraea NRRL 2338, complete genometranscriptional regulator, IclR family8e-0857.8
NC_009338:686932:705973705973706773801Mycobacterium gilvum PYR-GCK chromosome, complete genomeregulatory protein IclR8e-0857.8
NC_015577:2508027:253114025311402531940801Treponema azotonutricium ZAS-9 chromosome, complete genometranscriptional regulator1e-0757.4
NC_015458:2614108:263205226320522632963912Pusillimonas sp. T7-7 chromosome, complete genomeputative transcriptional regulator1e-0757.4
NC_006395:161455:169885169885170700816Haloarcula marismortui ATCC 43049 plasmid pNG700, completetranscription regulator1e-0757
NC_015138:2110149:213289621328962133828933Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeIclR family transcriptional regulator1e-0757
NC_016590:1183470:118606511860651186964900Burkholderia sp. YI23 chromosome 3, complete sequenceIclR family transcriptional regulator2e-0757
NC_014550:3534000:355058135505813551378798Arthrobacter arilaitensis Re117, complete genomeIclR family transcriptional regulator2e-0756.6
NC_014098:2332938:235415623541562354929774Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, IclR family2e-0756.2
NC_011725:2949519:296142429614242962176753Bacillus cereus B4264 chromosome, complete genomeIclR family transcriptional regulator4e-0755.8
NC_015422:1643000:164300416430041643801798Alicycliphilus denitrificans K601 chromosome, complete genomeIclR family transcriptional regulator5e-0755.5
NC_013202:906044:909580909580910356777Halomicrobium mukohataei DSM 12286, complete genometranscriptional regulator, IclR family4e-0755.5
NC_007951:1711223:171944717194471720283837Burkholderia xenovorans LB400 chromosome 1, complete sequenceTranscriptional regulator, IclR family5e-0755.1
NC_007650:832507:851070851070851981912Burkholderia thailandensis E264 chromosome II, complete sequencetranscriptional regulator, IclR family, putative6e-0755.1
NC_019974:1115553:116454311645431165343801Natronococcus occultus SP4, complete genometranscriptional regulator6e-0754.7
NC_015591:1161007:117147111714711172313843Sinorhizobium meliloti AK83 chromosome 3, complete sequenceIclR family transcriptional regulator2e-0653.1
NC_021171:1661923:168295816829581683677720Bacillus sp. 1NLA3E, complete genomeIclR family transcriptional regulator2e-0653.1
NC_010552:2454776:245477624547762455564789Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, IclR family3e-0652.8
NC_008687:229941:229941229941230696756Paracoccus denitrificans PD1222 chromosome 2, complete sequenceregulatory proteins, IclR4e-0652.4
NC_007005:2686551:271373727137372714576840Pseudomonas syringae pv. syringae B728a, complete genomeregulatory proteins, IclR4e-0652.4
NC_005773:3253575:327876932787693279608840Pseudomonas syringae pv. phaseolicola 1448A, complete genometranscriptional regulator, IclR family3e-0652.4
NC_019974:3013338:304036830403683041132765Natronococcus occultus SP4, complete genometranscriptional regulator4e-0652
NC_008712:250240:267556267556268293738Arthrobacter aurescens TC1 plasmid TC1, complete sequencePcaR transcriptional regulator, IclR family5e-0652
NC_013923:45876:523995239953202804Natrialba magadii ATCC 43099 plasmid pNMAG01, complete sequencetranscriptional regulator, IclR family6e-0651.6
NC_009483:1636189:165581316558131656577765Geobacter uraniireducens Rf4 chromosome, complete genomeregulatory protein IclR9e-0651.2
NC_003317:392271:396715396715397536822Brucella melitensis 16M chromosome I, complete sequenceTRANSCRIPTIONAL REGULATOR, ICLR FAMILY1e-0550.8
NC_010742:1595065:160697416069741607795822Brucella abortus S19 chromosome 1, complete sequenceBacterial regulatory protein, IclR family1e-0550.8
NC_007618:1593886:160579716057971606618822Brucella melitensis biovar Abortus 2308 chromosome I, completeBacterial regulatory proteins, IclR family1e-0550.8
NC_006932:1596732:160864116086411609462822Brucella abortus biovar 1 str. 9-941 chromosome I, completetranscriptional regulator, IclR family1e-0550.8